View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13709_low_11 (Length: 265)

Name: NF13709_low_11
Description: NF13709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13709_low_11
NF13709_low_11
[»] chr6 (8 HSPs)
chr6 (21-247)||(897115-897341)
chr6 (21-165)||(1237113-1237254)
chr6 (43-165)||(1182508-1182629)
chr6 (165-239)||(1182389-1182464)
chr6 (179-237)||(896558-896617)
chr6 (109-165)||(1193486-1193542)
chr6 (95-135)||(1183393-1183433)
chr6 (195-240)||(1237368-1237414)
[»] chr4 (3 HSPs)
chr4 (109-165)||(12857204-12857260)
chr4 (89-124)||(10203960-10203995)
chr4 (89-142)||(12857475-12857529)
[»] scaffold0302 (2 HSPs)
scaffold0302 (109-165)||(19741-19797)
scaffold0302 (21-62)||(19797-19838)
[»] chr7 (2 HSPs)
chr7 (122-165)||(20257183-20257226)
chr7 (21-59)||(20257148-20257186)


Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 897341 - 897115
Alignment:
Q  21 atcacattggtaacaagctgccatgacaacttctgataaatcctattccctcctcttacgaaaacgctccaaacaattgaaagaaaaacactcatcacct 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  897341 atcacattggtaacaagctgccatgacaacttctgataaatcctattcccccctcttacgaaaacgctccaaacaattgaaagaaaaacactcatcacct 897242  T
Q  121 aataacacaccagagcactaccaataacaaatcttaggcctaaaatcaaggactccagcatctcatccaaaaccccatttgtactcaatatgcaataaca 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  897241 aataacacaccagagcactaccaataacaaatcttaggcctaaaatcaaggactccagcatctcatccaaaaccccatttgtactcaatatgcaataaca 897142  T
Q  221 tatcctaagtattcaatatgctcacta 247  Q
    |||||||||||||||||||||||||||    
T  897141 tatcctaagtattcaatatgctcacta 897115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 1237113 - 1237254
Alignment:
Q  21 atcacattggtaacaagctgccatgacaacttctgataaatcctattccctcctcttacgaaaacgctccaaacaattgaaagaaaaacactcatcacct 120  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||  |||||||||||||||||||||  |||||||||||||||||||||||||    
T  1237113 atcacattggtaacaagc-gccatgacaacttctgataaatcctatcccc--ctcttacgaaaacgctccaaaagattgaaagaaaaacactcatcacct 1237209  T
Q  121 aataacacaccagagcactaccaataacaaatcttaggcctaaaa 165  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||    
T  1237210 aataaaacaccagagcactaccaataacaaatcttaggcataaaa 1237254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 1182629 - 1182508
Alignment:
Q  43 atgacaacttctgataaatcctattccctcctcttacgaaaacgctccaaacaattgaaagaaaaacactcatcacctaataacacaccagagcactacc 142  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |    
T  1182629 atgacaacttctgataaatcctattccc-cctcttacgaaaacgctccaaacaattgaaagaaaaacactcattacctaataacacaccagaacactaac 1182531  T
Q  143 aataacaaatcttaggcctaaaa 165  Q
    |||| ||||||||||||||||||    
T  1182530 aataccaaatcttaggcctaaaa 1182508  T

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Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 1182464 - 1182389
Alignment:
Q  165 atcaaggactccagcatctcatccaaaaccccatttgtactcaatatgcaataac-atatcctaagtattcaatat 239  Q
    |||||||||||||  |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1182464 atcaaggactccattatctgatccaaaaccccatttgtactcaatatgcaataacaatatcctaagtattcaatat 1182389  T

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Target: chr6; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 896617 - 896558
Alignment:
Q  179 catctcatccaaaaccccatttgtactcaatatgcaataac-atatcctaagtattcaat 237  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  896617 catctcatccaaaaccccatttgtactcaatatgcaataacaatatcctaagtattcaat 896558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 1193542 - 1193486
Alignment:
Q  109 cactcatcacctaataacacaccagagcactaccaataacaaatcttaggcctaaaa 165  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  1193542 cactcatcacctaataacacaccagaatactacctataacaaatcttaggcctaaaa 1193486  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 1183433 - 1183393
Alignment:
Q  95 aattgaaagaaaaacactcatcacctaataacacaccagag 135  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  1183433 aattgaaagaaaaacacttatcacctaataacacaccagag 1183393  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 1237368 - 1237414
Alignment:
Q  195 ccatttgtactcaatatgcaataac-atatcctaagtattcaatatg 240  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||||||    
T  1237368 ccatttgaactcaatatgcaataacaatatcctaagtactcaatatg 1237414  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 12857260 - 12857204
Alignment:
Q  109 cactcatcacctaataacacaccagagcactaccaataacaaatcttaggcctaaaa 165  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  12857260 cactcatcacctaataacacaccagaacactacctataacaaatcttaggcctaaaa 12857204  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 10203995 - 10203960
Alignment:
Q  89 ccaaacaattgaaagaaaaacactcatcacctaata 124  Q
    ||||||||||||||||||||||||| ||||||||||    
T  10203995 ccaaacaattgaaagaaaaacactcttcacctaata 10203960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 12857529 - 12857475
Alignment:
Q  89 ccaaacaattgaaagaaaa-acactcatcacctaataacacaccagagcactacc 142  Q
    ||||||||||||||||||| |||||||| |||||| ||||||| ||| |||||||    
T  12857529 ccaaacaattgaaagaaaagacactcataacctaagaacacacaagatcactacc 12857475  T

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Target: scaffold0302 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 19797 - 19741
Alignment:
Q  109 cactcatcacctaataacacaccagagcactaccaataacaaatcttaggcctaaaa 165  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||    
T  19797 cactcatcacctaataacacaccagaacactacctataacaaatcttaggtctaaaa 19741  T

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Target: scaffold0302; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 19838 - 19797
Alignment:
Q  21 atcacattggtaacaagctgccatgacaacttctgataaatc 62  Q
    |||||||||| | ||||||||||||||||| |||||||||||    
T  19838 atcacattggcatcaagctgccatgacaacctctgataaatc 19797  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 20257183 - 20257226
Alignment:
Q  122 ataacacaccagagcactaccaataacaaatcttaggcctaaaa 165  Q
    ||||||||| ||| ||||||| ||||||||||||||||||||||    
T  20257183 ataacacactagaacactacctataacaaatcttaggcctaaaa 20257226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 20257148 - 20257186
Alignment:
Q  21 atcacattggtaacaagctgccatgacaacttctgataa 59  Q
    |||||||||||| || |||||||||||||||||||||||    
T  20257148 atcacattggtatcaggctgccatgacaacttctgataa 20257186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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