View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13709_low_12 (Length: 258)
Name: NF13709_low_12
Description: NF13709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13709_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 102 - 247
Target Start/End: Complemental strand, 40814407 - 40814262
Alignment:
| Q |
102 |
gttgagcatgagatgattgattcattcacattatgcatagcattagtattatctttacctaacgcccactttgttcccaaacaggataatgattaattat |
201 |
Q |
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| T |
40814407 |
gttgagcatgagatgattgattcattcacattatgcatagcattagtattatctttacctaacgcccactttgttcccaaacaggataatgattaattat |
40814308 |
T |
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| Q |
202 |
gctgtttactacaataaacaagaatatgctaccaatttcagttcat |
247 |
Q |
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| T |
40814307 |
gctgtttactacaataaacaagaatatgctaccaatttcagttcat |
40814262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 40809079 - 40808967
Alignment:
| Q |
125 |
attcacattatgcatagcattagtattatctttacctaacgcccactttgttcccaaacaggataatgattaattatgctgtttactaca----ataaac |
220 |
Q |
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| T |
40809079 |
attcacataatgcatagtattagtgttatgtttacctaacacccactttgttcataaaaaggataatgattaattttgatgtgtaatacaatatataaac |
40808980 |
T |
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| Q |
221 |
aagaatatgctac |
233 |
Q |
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| T |
40808979 |
aagaatatgctac |
40808967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 40821826 - 40821756
Alignment:
| Q |
148 |
tattatctttacctaacgcccactttgttcccaaacaggataatgattaattatgctgtttactacaataaa |
219 |
Q |
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| T |
40821826 |
tattatgtttacctaacacccaccttgttccgaaaaaggataatgactaattatgctgtgta-tacaataaa |
40821756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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