View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13709_low_13 (Length: 227)

Name: NF13709_low_13
Description: NF13709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13709_low_13
NF13709_low_13
[»] chr8 (2 HSPs)
chr8 (7-185)||(9821130-9821308)
chr8 (189-227)||(9820475-9820513)
[»] chr2 (1 HSPs)
chr2 (67-185)||(38693599-38693718)
[»] chr4 (3 HSPs)
chr4 (83-185)||(38875382-38875481)
chr4 (7-64)||(38875620-38875677)
chr4 (189-227)||(38874107-38874145)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 9821308 - 9821130
Alignment:
Q  7 aaaggatgtagtattaattgaatgttctgcttttgattgttgacatcattttttagtattttactttactagttgacttcttatgagttgatgtgaattt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9821308 aaaggatgtagtattaattgaatgttctgcttttgattgttgacatcattttttagtagtttactttactagttgacttcttatgagttgatgtgaattt 9821209  T
Q  107 tgaacaaatcaggctagctgcattaagctggaatggtgaaggttcttttgtatttacgtcaagcagtgctccatatgat 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9821208 tgaacaaatcaggctagctgcattaagctggaatggtgaaggttctttcgtatttacgtcaagcagtgctccatatgat 9821130  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 9820513 - 9820475
Alignment:
Q  189 ggtaagtttatatttgttagtgaaacatacattttgaac 227  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9820513 ggtaagtttatatttgttagtgaaacatacattttgaac 9820475  T

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Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 38693599 - 38693718
Alignment:
Q  67 ttactttactagttgac-ttcttatgagttgatgtgaattttgaacaaatcaggctagctgcattaagctggaatggtgaaggttcttttgtatttacgt 165  Q
    ||||||||||||||  | ||||||||||||||||||| |||| || ||| |||| ||||||| |||||||||||||||||||||||||||| ||||||||    
T  38693599 ttactttactagttttccttcttatgagttgatgtgatttttcaaaaaaccaggttagctgctttaagctggaatggtgaaggttcttttgcatttacgt 38693698  T
Q  166 caagcagtgctccatatgat 185  Q
    ||||||||||| ||||||||    
T  38693699 caagcagtgcttcatatgat 38693718  T

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Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 38875481 - 38875382
Alignment:
Q  83 cttcttatgagttgatgtgaattttgaacaaatcaggctagctgcattaagctggaatggtgaaggttcttttgtatttacgtcaagcagtgctccatat 182  Q
    ||||||||||||||   ||||||||  ||||||||||||||||||||||||||||||||||| |||||||||  ||||||| ||||| ||||||||||||    
T  38875481 cttcttatgagttg---tgaattttcgacaaatcaggctagctgcattaagctggaatggtggaggttctttcatatttacttcaagtagtgctccatat 38875385  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 38875677 - 38875620
Alignment:
Q  7 aaaggatgtagtattaattgaatgttctgcttttgattgttgacatcattttttagta 64  Q
    |||||||||| ||||||||||||| ||  ||||||||||||||||||  |||||||||    
T  38875677 aaaggatgtaatattaattgaatgctccacttttgattgttgacatcgatttttagta 38875620  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 38874145 - 38874107
Alignment:
Q  189 ggtaagtttatatttgttagtgaaacatacattttgaac 227  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  38874145 ggtaagtttatatttcttagtgaaacatacatcttgaac 38874107  T

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