View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13709_low_2 (Length: 713)
Name: NF13709_low_2
Description: NF13709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13709_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 372 - 695
Target Start/End: Complemental strand, 32437626 - 32437303
Alignment:
| Q |
372 |
gaattcaaagcctaaacctaaatttacaactactgctcctaattctaatagaattattagcactaagactatccaccacaatagtacacctaaccctgaa |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
32437626 |
gaattcaaagcctaaacctaaatttacaactactgctcctaattctaatagaattattagcactaagactatccaccacaattgtacacctgaccctgaa |
32437527 |
T |
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| Q |
472 |
attaattttgggaagcttcaatttcccaagcttaatcctcacaggttgtttcacgttcaatttaagaggaacactaccctctgattgaaattgttgctgc |
571 |
Q |
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| T |
32437526 |
attaattttgggaagcttcaatttcccaagcttgatcctcacaggttgtttcacgttcaatttaagaggaacactaccctctgattgaaattgttgctgc |
32437427 |
T |
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| Q |
572 |
aatgaagagctcaaacctgttgcattctgtgtttgtcctgtcaaaggtatactaagaacagtaacatttttgtgcccttgatagaatttaggtaatgacc |
671 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32437426 |
aatgaagagctcaaacctgttgcattctgtgtttgtcctgtcaaaggtatactaagaacagtaacatttttgtgaccttgatagaatttaggtaatgacc |
32437327 |
T |
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| Q |
672 |
cttcacataattttgtgtctatat |
695 |
Q |
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|||||||||||||||||||||||| |
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| T |
32437326 |
cttcacataattttgtgtctatat |
32437303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 2 - 276
Target Start/End: Complemental strand, 32437999 - 32437721
Alignment:
| Q |
2 |
ttactcttcaactaaagttgattatagtttataacacaacaaatcatcattgcaatattttcatatcatcaaacaaaaaattatacaagaaactgttaga |
101 |
Q |
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||||||||| | |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32437999 |
ttactcttccccaaaagttgattctagtttattacacaacaaatcatcattgcaatattttcatatcatcaaacaaaaaattatacaagaaactgttaga |
32437900 |
T |
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| Q |
102 |
aatcacatttgagagtgaagataaagtgaaaatctcaacaatatttattttatta----aatatatagaataaacatatgtatgctatatatgaaaatgt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
32437899 |
aatcacatttgagagtgaagataaagtgaaaatctcaacaatatttattttattaaataaatatatagaataaacatatgtatgctatatatgaatatgt |
32437800 |
T |
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| Q |
198 |
aagtaatcaaaattacaagaattgtaactcaatctccaaatgctgatagaaagcaaaatccatcacattgagatatctc |
276 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32437799 |
aaataatcaaaattacaagaattgtaactcaatctccaaatgctgatggaaagcaaaatccatcacattgagatatctc |
32437721 |
T |
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