View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13709_low_4 (Length: 491)
Name: NF13709_low_4
Description: NF13709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13709_low_4 |
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| [»] scaffold0312 (2 HSPs) |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: scaffold0312 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 491
Target Start/End: Original strand, 20168 - 20642
Alignment:
| Q |
19 |
cgacctcggttactcccgagaaattaaacctttagtgaagctcattaattaaccacttgagttaaacaacttgcttaaaagtcgttatttaatttctatt |
118 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
20168 |
cgaccttggttactcccgagaaattaaacctttagtgaagctcattaattaaccacttgagtcaaacaacttgcttaaaagtcattatttaatttctatt |
20267 |
T |
|
| Q |
119 |
ttgtttgtataaataagaactgcaagtatatgtattta--tagttttctaaatttaacttgtttatttataggtg-ttttggatcttaccttttggcttt |
215 |
Q |
| |
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||||||||||||||||||||||||||| | |||| | |||||||||||| ||||||||||||||||||| |||||||||||||||||||| || |
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| T |
20268 |
ttgtttgtataaataagaactgcaagtggaac-atttcccttattttctaaattttacttgtttatttataggtggttttggatcttaccttttgggatt |
20366 |
T |
|
| Q |
216 |
aaataggagcacatatgagcgagtcggggggtctagtacaccggggaatactcctgacacaaaggagcctggaatttgctggatgactggctttctcttt |
315 |
Q |
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|||||| |||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
20367 |
gaatagggcgacatatgagcgagttgggggggctagtacaccggggaatactcctgacaccaaggagcctggaattagctggatgactggctttctcttt |
20466 |
T |
|
| Q |
316 |
gttacttactttgttgggctgacagcattaattccttttcaaaaggtattgcttatgaatgaatctggattttgtgcagtcaaattacaattactttacg |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||| || ||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20467 |
gttacttactttgttgggctgacagcattaataccctttagaaaggtattggttatgaatgaatctggattttgtgcggtcaaattacaattactttacg |
20566 |
T |
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| Q |
416 |
actttgagcaaacagctaatttttgcagtatgagattgacaaaattacagtcaacattccctacaatcactacatt |
491 |
Q |
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| T |
20567 |
attttgagcaaacagctaatttttgcagtctacgattgacaaaattacagtcaaaatttcctacaatcactacatt |
20642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 149 - 367
Target Start/End: Original strand, 2310 - 2529
Alignment:
| Q |
149 |
tgtatttatagttttctaaatttaacttgtttatttataggtg-ttttggatcttaccttttggctttaaataggagcacatatgagcgagtcggggggt |
247 |
Q |
| |
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||||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| ||| |||||| |||||||||||||| |||||| |
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| T |
2310 |
tgtatttgtagttttctaaattttacttgttcatttataggtggttttggatcttaccttttgggtttgaatagggcgacatatgagcgagttggggggg |
2409 |
T |
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| Q |
248 |
ctagtacaccggggaatactcctgacacaaaggagcctggaatttgctggatgactggctttctctttgttacttactttgttgggctgacagcattaat |
347 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||| |||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
2410 |
ctagtacaccggggaatactcctgacaccaaggagactggaattggctggatgacaggctttctatttgttacttactttgttgggctaacagcattaat |
2509 |
T |
|
| Q |
348 |
tccttttcaaaaggtattgc |
367 |
Q |
| |
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||| ||| ||||||||||| |
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| T |
2510 |
tccctttagaaaggtattgc |
2529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 491
Target Start/End: Complemental strand, 410402 - 409928
Alignment:
| Q |
19 |
cgacctcggttactcccgagaaattaaacctttagtgaagctcattaattaaccacttgagttaaacaacttgcttaaaagtcgttatttaatttctatt |
118 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
410402 |
cgaccttggttactcccgagaaattaaacctttagtgaagctcattaattaaccacttgagtcaaacaacttgcttaaaagtcattatttaatttctatt |
410303 |
T |
|
| Q |
119 |
ttgtttgtataaataagaactgcaagtatatgtattta--tagttttctaaatttaacttgtttatttataggtg-ttttggatcttaccttttggcttt |
215 |
Q |
| |
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||||||||||||||||||||||||||| | |||| | |||||||||||| ||||||||||||||||||| |||||||||||||||||||| || |
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| T |
410302 |
ttgtttgtataaataagaactgcaagtggaac-atttcccttattttctaaattttacttgtttatttataggtggttttggatcttaccttttgggatt |
410204 |
T |
|
| Q |
216 |
aaataggagcacatatgagcgagtcggggggtctagtacaccggggaatactcctgacacaaaggagcctggaatttgctggatgactggctttctcttt |
315 |
Q |
| |
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|||||| |||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
410203 |
gaatagggcgacatatgagcgagttgggggggctagtacaccggggaatactcctgacaccaaggagcctggaattagctggatgactggctttctcttt |
410104 |
T |
|
| Q |
316 |
gttacttactttgttgggctgacagcattaattccttttcaaaaggtattgcttatgaatgaatctggattttgtgcagtcaaattacaattactttacg |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||| || ||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
410103 |
gttacttactttgttgggctgacagcattaataccctttagaaaggtattggttatgaatgaatctggattttgtgcggtcaaattacaattactttacg |
410004 |
T |
|
| Q |
416 |
actttgagcaaacagctaatttttgcagtatgagattgacaaaattacagtcaacattccctacaatcactacatt |
491 |
Q |
| |
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| ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
410003 |
attttgagcaaacagctaatttttgcagtctacgattgacaaaattacagtcaaaatttcctacaatcactacatt |
409928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 408
Target Start/End: Complemental strand, 440952 - 440566
Alignment:
| Q |
20 |
gacctcggttactcccgagaaattaaacctttagtgaagctcattaattaaccacttgagttaaacaacttgcttaaaagtcgttatttaatttctattt |
119 |
Q |
| |
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||||||||||||||| || ||||||||||| ||||||||||||||| |||||||||| |||| | ||||||| | || ||||||||||||||||| |
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| T |
440952 |
gacctcggttactcctgaacaattaaaccttcagtgaagctcattaa----ccacttgagtcaaaccaattgcttagcaatcattatttaatttctattt |
440857 |
T |
|
| Q |
120 |
tgtttgtataaat-aagaactgcaagtatatgtatttatagttttctaaatttaacttgtttatttataggtg-ttttggatcttaccttttggctttaa |
217 |
Q |
| |
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||| ||||||||| |||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
440856 |
tgtatgtataaatgaagaactgaaagtatatgtatttaaagttttctaaattttacttgtttatttataggtggttttggatcttaccttttggctttaa |
440757 |
T |
|
| Q |
218 |
ataggagcacatatgagcgagtcggggggtctagtacaccggggaatactcctgacacaaaggagcctggaatttgctggatgactggctttctctttgt |
317 |
Q |
| |
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|||||||||||||||| |||||||||||| ||||||| || ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
440756 |
ataggagcacatatgatcgagtcgggggggctagtaccccagggaatactcctgacaccaaggagcctggaattggctggatgactggttttctctttgt |
440657 |
T |
|
| Q |
318 |
tacttactttgttgggctgacagcattaattccttttcaaaaggtattgcttatgaatgaatctggattttgtgcagtcaaattacaatta |
408 |
Q |
| |
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| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
440656 |
ttcttactttgttgggctgacagctttaattccttttcgtaaggtattgcttatgaatgaatccggattttgtgcagtcaaattactatta |
440566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 103 - 400
Target Start/End: Complemental strand, 403250 - 402951
Alignment:
| Q |
103 |
ttatttaatttctattttgtttgtataaat-aagaactgcaagtatatgtatttatagttttctaaatttaacttgtttatttataggtg-ttttggatc |
200 |
Q |
| |
|
||||||||||| |||||||| |||| |||| ||||| || |||| |||||||| |||||| |||| ||| ||||||| ||||||||||| ||||||||| |
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| T |
403250 |
ttatttaatttatattttgtatgtagaaatgaagaattgaaagtgaatgtatttgtagtttcctaatttttacttgttcatttataggtggttttggatc |
403151 |
T |
|
| Q |
201 |
ttaccttttggctttaaataggagcacatatgagcgagtcggggggtctagtacaccggggaatactcctgacacaaaggagcctggaatttgctggatg |
300 |
Q |
| |
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||||||||||| ||| |||||| |||||||||||||| |||||| |||||| ||| ||||||||||||||||| ||||| |||||||| | |||||| |
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| T |
403150 |
ttaccttttgggtttgaatagggcgacatatgagcgagttgggggggctagtataccagggaatactcctgacaccaaggaaactggaattggttggatg |
403051 |
T |
|
| Q |
301 |
actggctttctctttgttacttactttgttgggctgacagcattaattccttttcaaaaggtattgcttatgaatgaatctggattttgtgcagtcaaat |
400 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
403050 |
acaggctttctctttgttacttactttgttgggctaacagcattaattccctttagaaaggtattgcttatgaatgattcttgattttgtgcagtcaaat |
402951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 149 - 367
Target Start/End: Complemental strand, 428240 - 428021
Alignment:
| Q |
149 |
tgtatttatagttttctaaatttaacttgtttatttataggtg-ttttggatcttaccttttggctttaaataggagcacatatgagcgagtcggggggt |
247 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| ||| |||||| |||||||||||||| |||||| |
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| T |
428240 |
tgtatttgtagttttctaaattttacttgttcatttataggtggttttggatcttaccttttgggtttgaatagggcgacatatgagcgagttggggggg |
428141 |
T |
|
| Q |
248 |
ctagtacaccggggaatactcctgacacaaaggagcctggaatttgctggatgactggctttctctttgttacttactttgttgggctgacagcattaat |
347 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| |||||||| |||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
428140 |
ctagtacaccggggaatactcctgacaccaaggagactggaattggctggatgacaggctttctatttgttacttactttgttgggctaacagcattaat |
428041 |
T |
|
| Q |
348 |
tccttttcaaaaggtattgc |
367 |
Q |
| |
|
||| ||| ||||||||||| |
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| T |
428040 |
tccctttagaaaggtattgc |
428021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 36689653 - 36689619
Alignment:
| Q |
206 |
ttttggctttaaataggagcacatatgagcgagtc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
36689653 |
ttttggctttaaataggagcacatatgagcgagtc |
36689619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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