View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13709_low_5 (Length: 481)
Name: NF13709_low_5
Description: NF13709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13709_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 11 - 464
Target Start/End: Original strand, 9679284 - 9679737
Alignment:
| Q |
11 |
aagaatatggaaatagcaatgttcatgaaaacctcttctaaacactttcctaaattctatccatcaatctaacaatgcaagatcaattcatcatcctatc |
110 |
Q |
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| T |
9679284 |
aagaaaatggaaatagcaatgttcatgaaaacctcttctaaacactttcctaaattctatccatcaatctaacaatgcaagatcaattcatcatcctatc |
9679383 |
T |
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| Q |
111 |
tttgtttcttgttctttttggtccaatccaagtgatctcacaaaaccaacctttcaatgaagatatgctagggttgattgtgttcaaagcaggtctagaa |
210 |
Q |
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| T |
9679384 |
tttgtttcttgttctttttggtccactccaagtgatctcacaaaaccaacctttcaatgaagatatgctagggttgattgtgttcaaagcaggtctagaa |
9679483 |
T |
|
| Q |
211 |
gatccgaaaaacaaactttcttcttggaatgaagatgattatagtccttgcaattgggaaggtgtcaaatgtgatccttcaacaaatagggtatcttctc |
310 |
Q |
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| T |
9679484 |
gatccgaaaaacaaactttcttcttggaatgaagatgattatagtccttgcaattgggaaggtgttaaatgtgatccttcaacaaatagggtatcttctc |
9679583 |
T |
|
| Q |
311 |
ttgttcttgatggattctctctttcaggacatatcggtaaaagccttatgaaattgcagttccttcaaattctttcactttctcggaacaacttcacggg |
410 |
Q |
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| T |
9679584 |
ttgttcttgatggattctctctttcaggacatattggtaaaagccttatgagattacagttccttcaaattctttcactttctcggaacaacttcacggg |
9679683 |
T |
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| Q |
411 |
gagaataaaccatgatcttcttattacactttggaatctaaaagttgttgattt |
464 |
Q |
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| T |
9679684 |
gagaataaaccatgatcttcttattacactttggaatctaaaagttgttgattt |
9679737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 162 - 407
Target Start/End: Complemental strand, 27380394 - 27380149
Alignment:
| Q |
162 |
tttcaatgaagatatgctagggttgattgtgttcaaagcaggtctagaagatccgaaaaacaaactttcttcttggaatgaagatgattatagtccttgc |
261 |
Q |
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||||||||| ||||| |||| || |||||||| ||||| ||| || ||||||| ||| ||||||| ||| ||||||||||||||||| | |||||| |
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| T |
27380394 |
tttcaatgatgatatattaggcttaattgtgtttaaagctggtttacaagatcctaaacacaaactcatttcatggaatgaagatgattacactccttgt |
27380295 |
T |
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| Q |
262 |
aattgggaaggtgtcaaatgtgatccttcaacaaatagggtatcttctcttgttcttgatggattctctctttcaggacatatcggtaaaagccttatga |
361 |
Q |
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| T |
27380294 |
aattgggaaggtgtgaaatgtgattcttcaaacaatagagtcacttctgttatacttgatggattctctctttcaggtcacattgatagaggcttattga |
27380195 |
T |
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| Q |
362 |
aattgcagttccttcaaattctttcactttctcggaacaacttcac |
407 |
Q |
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| T |
27380194 |
gattgcagtttcttcaaactctatcactttctggtaacaatttcac |
27380149 |
T |
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