View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13709_low_7 (Length: 355)
Name: NF13709_low_7
Description: NF13709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13709_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 6 - 342
Target Start/End: Complemental strand, 28288453 - 28288117
Alignment:
| Q |
6 |
agagaagaaagtgtttgaaactgaattaaggacagttgtaaaaacagcctcaccaatatcaaaagcttcacctttgttgcatttttcctttacataatcc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28288453 |
agagaagaaagtgtttgaaactgaattaaggacagttgtaaaaacagcctcaccaatatcaaaagcttcacctttgttgcatttttcctttacataatcc |
28288354 |
T |
|
| Q |
106 |
aataatacttgtaacttttgttggcgaatgttttttgttgagtcaagcatttttgtagaaaatacttttgtagcacaaattttccttagtttcttccaca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28288353 |
aataatacttgtaacttttgttggcgaatgttttttgttgagtcaagcatttttgtagaaaatacttttgtagcacaaattttccttagtttcttccaca |
28288254 |
T |
|
| Q |
206 |
aagctaatgttggaagccacccaagtgagaatttgttatgatcaagtgcatgtactgcatgtgggacagttctatttgagaagatttgagaattttcatg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28288253 |
aagctaatgttggaagccacccaagtgagaatttgttatgatcaagtgcatgtattgcatgtgggacagttctatttgagaagatttgagaattttcatg |
28288154 |
T |
|
| Q |
306 |
taaaacttgtttggctagttgtggtgatgaaattact |
342 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28288153 |
taaaacttgtttggctaattgtggtgatgaaattact |
28288117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 342
Target Start/End: Original strand, 28296760 - 28297096
Alignment:
| Q |
6 |
agagaagaaagtgtttgaaactgaattaaggacagttgtaaaaacagcctcaccaatatcaaaagcttcacctttgttgcatttttcctttacataatcc |
105 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||| | ||||||||||||| |||||| || ||||||||| |
|
|
| T |
28296760 |
agagaacaaagtgtttgaaattgaattaagaacagtgttaaaaacagcctcaccaatatcaaaaacctcacctttgttgcttttttcattcacataatcc |
28296859 |
T |
|
| Q |
106 |
aataatacttgtaacttttgttggcgaatgttttttgttgagtcaagcatttttgtagaaaatacttttgtagcacaaattttccttagtttcttccaca |
205 |
Q |
| |
|
|||||| |||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||| |||||| ||||||||||||||||||| | |
|
|
| T |
28296860 |
aataattcttgcaacttttgttggcgaaggttttttgttgagtcaagcatttttttagaaaatacatttgtggcacaacttttccttagtttcttccata |
28296959 |
T |
|
| Q |
206 |
aagctaatgttggaagccacccaagtgagaatttgttatgatcaagtgcatgtactgcatgtgggacagttctatttgagaagatttgagaattttcatg |
305 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||| |||| | ||||||||| ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
28296960 |
aagctaatgttggaagccacccaattgagaatttgtcatgatcaactgcactaagtgcatgtggaacagttctattagagaagatttgggaattttcatg |
28297059 |
T |
|
| Q |
306 |
taaaacttgtttggctagttgtggtgatgaaattact |
342 |
Q |
| |
|
||| |||||||||||| |||||| |||||||||||| |
|
|
| T |
28297060 |
taaggcttgtttggctacttgtggagatgaaattact |
28297096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 329
Target Start/End: Original strand, 28320822 - 28321145
Alignment:
| Q |
6 |
agagaagaaagtgtttgaaactgaattaaggacagttgtaaaaacagcctcaccaatatcaaaagcttcacctttgttgcatttttcctttacataatcc |
105 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||||| | |||||| || |||||||| |
|
|
| T |
28320822 |
agagaacaaagtgtttgaaattgaattaaggacatttgtaaaaacagcttcaccaatatcaaaaacctcacctttgttacttttttcattcacataatct |
28320921 |
T |
|
| Q |
106 |
aataatacttgtaacttttgttggcgaatgttttttgttgagtcaagcatttttgtagaaaatacttttgtagcacaaattttccttagtttcttccaca |
205 |
Q |
| |
|
|||||| |||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28320922 |
aataattcttgcaacttttgttggcgaaggtttcttgttgagtcaagcatttttgtagaaaatacttttgtagcacaacttttccttagtttcttccaca |
28321021 |
T |
|
| Q |
206 |
aagctaatgttggaagccacccaagtgagaatttgttatgatcaagtgcatgtactgcatgtgggacagttctatttgagaagatttgagaattttcatg |
305 |
Q |
| |
|
|| ||||||||||| |||||||| ||||||||||| |||||||| |||| | |||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
28321022 |
aatttaatgttggaacccacccaactgagaatttgtcatgatcaactgcagagattgcatgtgggacagttctatttgaaaagatttgagaattgtcatg |
28321121 |
T |
|
| Q |
306 |
taaaacttgtttggctagttgtgg |
329 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
28321122 |
taaaacttgtttggctacttgtgg |
28321145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 28310255 - 28310584
Alignment:
| Q |
13 |
aaagtgtttgaaactgaattaaggacagttgtaaaaacagcctcaccaatatcaaaagcttcacctttgttgcatttttcctttacataatccaataata |
112 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||| |||||||| || | |||||| || |||||||| |||||| |
|
|
| T |
28310255 |
aaagtgtttgaaattgaattaaggatagttgtaaaaacagccgcaccaatatcaaaaatctcacctttcttacttttttcattcacataatctaataatt |
28310354 |
T |
|
| Q |
113 |
cttgtaacttttgttggcgaatgttttttgttgagtcaagcatttttgtagaaaatacttttgtagcacaaattttccttagtttcttccacaaagctaa |
212 |
Q |
| |
|
|||| |||||||||||||||| | |||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
28310355 |
cttgcaacttttgttggcgaaggatttttgttgagtcaagtacttttgtagaaaatacttttgtagcacaaaatttccttagtttcttccatgaagctaa |
28310454 |
T |
|
| Q |
213 |
tgttggaagccacccaagtgagaatttgttatgatcaagtgcatgtactgcatgtgggacagttctatttgagaagatttgagaattttcatgtaaaact |
312 |
Q |
| |
|
|||||||||| ||||| ||| ||||||| ||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28310455 |
tgttggaagcatcccaattgataatttgtcatgatcaagtgcacaaagtgcatgtgggacagttctattagagaagatttgagaattttcatgtaaaact |
28310554 |
T |
|
| Q |
313 |
tgtttggctagttgtggtgatgaaattact |
342 |
Q |
| |
|
|||||||||||||| |||||||| |||||| |
|
|
| T |
28310555 |
tgtttggctagttgaggtgatgagattact |
28310584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 6 - 342
Target Start/End: Original strand, 28331301 - 28331637
Alignment:
| Q |
6 |
agagaagaaagtgtttgaaactgaattaaggacagttgtaaaaacagcctcaccaatatcaaaagcttcacctttgttgcatttttcctttacataatcc |
105 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||| ||||| |||||||||||||||||||||||||| | || |||||||||| |||||| || |||||||| |
|
|
| T |
28331301 |
agagaacaaagtatttgaaattgaattaagaacagtgttaaaaacagcctcaccaatatcaaaaacctctcctttgttgcttttttcattcacataatct |
28331400 |
T |
|
| Q |
106 |
aataatacttgtaacttttgttggcgaatgttttttgttgagtcaagcatttttgtagaaaatacttttgtagcacaaattttccttagtttcttccaca |
205 |
Q |
| |
|
|||||| |||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28331401 |
aataattcttgcaacttttgttgacgaaggatttttgttgagtcaagcatttttgtagaaaatacttgtgtagcacaaattttccttagtttcttccaca |
28331500 |
T |
|
| Q |
206 |
aagctaatgttggaagccacccaagtgagaatttgttatgatcaagtgcatgtactgcatgtgggacagttctatttgagaagatttgagaattttcatg |
305 |
Q |
| |
|
|||||||||||||||| || | ||||||||||| ||||||||||||| | ||||| | ||| |||||| ||||| ||||| |||||||| || |
|
|
| T |
28331501 |
aagctaatgttggaagtgttcctattgagaatttgtgatgatcaagtgcacaaattgcatccgagactactctattagagaatatttgggaattttcttg |
28331600 |
T |
|
| Q |
306 |
taaaacttgtttggctagttgtggtgatgaaattact |
342 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
28331601 |
taacacttgtttggctagttgtggtgatgagattact |
28331637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 6 - 125
Target Start/End: Original strand, 28304645 - 28304765
Alignment:
| Q |
6 |
agagaagaaagtgtttgaaactgaattaaggacagttgtaaaaacagcctcaccaatatcaaaagcttcacctttgttgcatttttcctttacataatcc |
105 |
Q |
| |
|
|||||| ||||||||||||| |||||||| || ||||||||||||||| ||||||||||||||| |||||||||||| || |||||| || ||||||||| |
|
|
| T |
28304645 |
agagaacaaagtgtttgaaattgaattaaagaaagttgtaaaaacagcatcaccaatatcaaaaacttcacctttgtagcctttttctttcacataatcc |
28304744 |
T |
|
| Q |
106 |
aa-taatacttgtaacttttg |
125 |
Q |
| |
|
|| |||| ||| ||||||||| |
|
|
| T |
28304745 |
aattaattcttttaacttttg |
28304765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University