View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_high_11 (Length: 517)
Name: NF1370_high_11
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 67 - 377
Target Start/End: Complemental strand, 12013371 - 12013065
Alignment:
| Q |
67 |
cactctaaaacgttgtaagatacaatattgattttaggtattactctttctagacatttccttaagctgctagaaaaatacactccaaatgtctaattgg |
166 |
Q |
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| T |
12013371 |
cactctaaaatgttataagatacaatattaattttaggtat-actctttcttaacatttccttaaactgctagaaaaatagactccaattgtctaattgg |
12013273 |
T |
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| Q |
167 |
tgtttgatatattgtttgtattacatgaacaatgtcaacaaaaactaaagtcttttcttttcccactcaatggggtcggtgacgtgaatcaaattacgcc |
266 |
Q |
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| T |
12013272 |
tgtttgatatattgtttgcattacatgaacaatgtcaacaaaaactaaagtcttttcttttcccactaaatggggtcggtgacatgaatcaaattacacc |
12013173 |
T |
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| Q |
267 |
ataatgtgttgccatgaatcatttctatagttagactagttaactcaaaatctctcttattttannnnnnngacaggaaaggaatctcattagataaatg |
366 |
Q |
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| T |
12013172 |
ataatgtgttgccatgaatcatttctaaagatagactagttaacttaaaatctcttttttttt---tttttgacaggaaaggaatctcattagataaatg |
12013076 |
T |
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| Q |
367 |
gtaaatcctta |
377 |
Q |
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||||||||||| |
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| T |
12013075 |
gtaaatcctta |
12013065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 338 - 489
Target Start/End: Complemental strand, 11991558 - 11991406
Alignment:
| Q |
338 |
gacaggaaaggaatctcattagataaatggtaaatccttacaaacagcagccataatttggtcaggaactttgccttcccaaagcatacaacca-cagaa |
436 |
Q |
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| T |
11991558 |
gacaggaaaggaatttcattagataaatggtaaatccttacaaacagaagccataatttggtcaggaacattggcttcccaaagcttacacccagcagaa |
11991459 |
T |
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| Q |
437 |
agtgagaagctgacaagactacgtgctacagcattacaatctctttcaacaaa |
489 |
Q |
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| T |
11991458 |
agtgctaagctgacaagactatgtgctacagtattgcaatctctttgaacaaa |
11991406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 121 - 325
Target Start/End: Complemental strand, 12024713 - 12024514
Alignment:
| Q |
121 |
catttccttaagctgctagaaaaatacactccaaatgtctaattggtgtttgatatattgtttgtattacatgaacaatgtcaacaaaaactaaagtctt |
220 |
Q |
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| T |
12024713 |
catttctttaaattgcttgaaaattagactctgaatgtttaattggtgtctgatatcttgtctatagttctcgaacaacatcaacaaaaactaaagtctt |
12024614 |
T |
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| Q |
221 |
ttcttttcccactcaatggggtcggtgacgtgaatcaaattacgccataatgtgttgccatgaatcatttctatagttagactagttaactcaaaatctc |
320 |
Q |
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| T |
12024613 |
ttc-----ccactaaatggggccagtgacatgaatcaagtgatgccataatgtgttgtcatgaatcatttctaaagatagactagttaactgaaaatctc |
12024519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 166 - 322
Target Start/End: Complemental strand, 11991733 - 11991588
Alignment:
| Q |
166 |
gtgtttgatatattgtttgtattacatgaacaatgtcaacaaaaactaaagtcttttcttttcccactcaatggggtcggtgacgtgaatcaaattacgc |
265 |
Q |
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|||||||||||||||| ||||| |||||||| | ||||||||||||||||||||| | |||| |||||||||||||||| ||||||||||| | |
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| T |
11991733 |
gtgtttgatatattgtatgtatcacatgaacga---caacaaaaactaaagtctttttt-----cactaaatggggtcggtgacgcgaatcaaattatgt |
11991642 |
T |
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| Q |
266 |
cataatgtgttgccatgaatcatttctatagttagactagttaactcaaaatctctc |
322 |
Q |
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| T |
11991641 |
cataatgtg---ccatgaatcatttctgaagatagacttgttaactcaaaatctctc |
11991588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 2090675 - 2090629
Alignment:
| Q |
227 |
tcccactcaatggggtcggtgacgtgaatcaaattacgccataatgt |
273 |
Q |
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| T |
2090675 |
tcccactcaatggggtcgggtacatggatcaaattacgccataatgt |
2090629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 43497599 - 43497657
Alignment:
| Q |
266 |
cataatgtgttgccatgaatcatttctatagttagactagttaactcaaaatctctctt |
324 |
Q |
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| T |
43497599 |
cataatatgttatcatgaatcatttctaaagatagattagttaactcaaattctctctt |
43497657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 17269005 - 17269055
Alignment:
| Q |
223 |
cttttcccactcaatggggtcggtgacgtgaatcaaattacgccataatgt |
273 |
Q |
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||||||||||| ||||||||||| || || |||||||||||||||||||| |
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| T |
17269005 |
cttttcccactaaatggggtcggctacatggatcaaattacgccataatgt |
17269055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 52532632 - 52532682
Alignment:
| Q |
223 |
cttttcccactcaatggggtcggtgacgtgaatcaaattacgccataatgt |
273 |
Q |
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| T |
52532632 |
cttttcccactaagtggggtcggctacatgaatcaaattacgccataatgt |
52532682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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