View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_high_12 (Length: 516)
Name: NF1370_high_12
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 29 - 376
Target Start/End: Complemental strand, 12013407 - 12013065
Alignment:
| Q |
29 |
agatactctaaaatcgtttttcttttagnnnnnnnnncactctaaaacgttgtaagatacaatattgattttaggtattactctttctagacatttcctt |
128 |
Q |
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| T |
12013407 |
agatactctaaaatcgtttttcttt-agaaagaaagacactctaaaatgttataagatacaatattaattttaggtat-actctttcttaacatttcctt |
12013310 |
T |
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| Q |
129 |
aagctgctagaaaaatacactccaaatgtctaattggtgtttgatatattgtttgtattacatgaacaatgtcaacaaaaactaaagtcttttcttttcc |
228 |
Q |
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| T |
12013309 |
aaactgctagaaaaatagactccaattgtctaattggtgtttgatatattgtttgcattacatgaacaatgtcaacaaaaactaaagtcttttcttttcc |
12013210 |
T |
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| Q |
229 |
cactcaatggggtcggtgacgtgaatcaaattacgccataatgtgttgccatgaatcatttctatagttagactagttaactcaaaatctctcttatttt |
328 |
Q |
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| T |
12013209 |
cactaaatggggtcggtgacatgaatcaaattacaccataatgtgttgccatgaatcatttctaaagatagactagttaacttaaaatctcttttttttt |
12013110 |
T |
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| Q |
329 |
annnnnnngacaggaaaggaatctcattagataaatggtaaatcctta |
376 |
Q |
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| T |
12013109 |
---tttttgacaggaaaggaatctcattagataaatggtaaatcctta |
12013065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 337 - 488
Target Start/End: Complemental strand, 11991558 - 11991406
Alignment:
| Q |
337 |
gacaggaaaggaatctcattagataaatggtaaatccttacaaacagcagccataatttggtcaggaactttgccttcccaaagcatacaacca-cagaa |
435 |
Q |
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| T |
11991558 |
gacaggaaaggaatttcattagataaatggtaaatccttacaaacagaagccataatttggtcaggaacattggcttcccaaagcttacacccagcagaa |
11991459 |
T |
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| Q |
436 |
agtgagaagctgacaagactacgtgctacagcattacaatctctttcaacaaa |
488 |
Q |
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| T |
11991458 |
agtgctaagctgacaagactatgtgctacagtattgcaatctctttgaacaaa |
11991406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 120 - 324
Target Start/End: Complemental strand, 12024713 - 12024514
Alignment:
| Q |
120 |
catttccttaagctgctagaaaaatacactccaaatgtctaattggtgtttgatatattgtttgtattacatgaacaatgtcaacaaaaactaaagtctt |
219 |
Q |
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| T |
12024713 |
catttctttaaattgcttgaaaattagactctgaatgtttaattggtgtctgatatcttgtctatagttctcgaacaacatcaacaaaaactaaagtctt |
12024614 |
T |
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| Q |
220 |
ttcttttcccactcaatggggtcggtgacgtgaatcaaattacgccataatgtgttgccatgaatcatttctatagttagactagttaactcaaaatctc |
319 |
Q |
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| T |
12024613 |
ttc-----ccactaaatggggccagtgacatgaatcaagtgatgccataatgtgttgtcatgaatcatttctaaagatagactagttaactgaaaatctc |
12024519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 165 - 321
Target Start/End: Complemental strand, 11991733 - 11991588
Alignment:
| Q |
165 |
gtgtttgatatattgtttgtattacatgaacaatgtcaacaaaaactaaagtcttttcttttcccactcaatggggtcggtgacgtgaatcaaattacgc |
264 |
Q |
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|||||||||||||||| ||||| |||||||| | ||||||||||||||||||||| | |||| |||||||||||||||| ||||||||||| | |
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| T |
11991733 |
gtgtttgatatattgtatgtatcacatgaacga---caacaaaaactaaagtctttttt-----cactaaatggggtcggtgacgcgaatcaaattatgt |
11991642 |
T |
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| Q |
265 |
cataatgtgttgccatgaatcatttctatagttagactagttaactcaaaatctctc |
321 |
Q |
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| T |
11991641 |
cataatgtg---ccatgaatcatttctgaagatagacttgttaactcaaaatctctc |
11991588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 2090675 - 2090629
Alignment:
| Q |
226 |
tcccactcaatggggtcggtgacgtgaatcaaattacgccataatgt |
272 |
Q |
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| T |
2090675 |
tcccactcaatggggtcgggtacatggatcaaattacgccataatgt |
2090629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 43497599 - 43497657
Alignment:
| Q |
265 |
cataatgtgttgccatgaatcatttctatagttagactagttaactcaaaatctctctt |
323 |
Q |
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| T |
43497599 |
cataatatgttatcatgaatcatttctaaagatagattagttaactcaaattctctctt |
43497657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 17269005 - 17269055
Alignment:
| Q |
222 |
cttttcccactcaatggggtcggtgacgtgaatcaaattacgccataatgt |
272 |
Q |
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||||||||||| ||||||||||| || || |||||||||||||||||||| |
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| T |
17269005 |
cttttcccactaaatggggtcggctacatggatcaaattacgccataatgt |
17269055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 52532632 - 52532682
Alignment:
| Q |
222 |
cttttcccactcaatggggtcggtgacgtgaatcaaattacgccataatgt |
272 |
Q |
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| T |
52532632 |
cttttcccactaagtggggtcggctacatgaatcaaattacgccataatgt |
52532682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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