View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_high_13 (Length: 504)
Name: NF1370_high_13
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 292 - 450
Target Start/End: Original strand, 7468793 - 7468955
Alignment:
| Q |
292 |
aatcacccttcattttgggtttat----tcggcttcaccatttcctccttgttcttggggtgtagcttgttgcaaagagaaattgagtgtccaatggtta |
387 |
Q |
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| T |
7468793 |
aatcacccttcattttgggtttatatattcagcttcaccatttcctccttgttcttggggtgtagcttgttgcaaagagatattgagtgtccaatggtta |
7468892 |
T |
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| Q |
388 |
aacaattggtgcaaaacttaggtgatctatcataaacaatgtcaacacagaacgcaaagccct |
450 |
Q |
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| T |
7468893 |
aacaattggtgcaaaacttaggtaatctatcataaacaatgtcaacacagaacgcaaagccct |
7468955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 434
Target Start/End: Original strand, 8304253 - 8304401
Alignment:
| Q |
286 |
tagaagaatcacccttcattttgggtttattcggcttcaccatttcctccttgttcttggggtgtagcttgttgcaaagagaaattgagtgtccaatggt |
385 |
Q |
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| T |
8304253 |
tagaataatcacccttcaatttggctttatccggcttcaccctatcctcattgttctctgggtgcaatttgttgcgaagagaaactaagtgccctatgtt |
8304352 |
T |
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| Q |
386 |
taaacaattggtgcaaaacttaggtgatctatcataaacaatgtcaaca |
434 |
Q |
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| T |
8304353 |
gaaacaattggaacaaaactcatacaatctttcataaacaatgtaaaca |
8304401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 498
Target Start/End: Complemental strand, 24262271 - 24262233
Alignment:
| Q |
460 |
gtccaaatttctcaaaacataacaggaacttcaactttc |
498 |
Q |
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| T |
24262271 |
gtccaaatttctcaaaacataacaggaactccaactttc |
24262233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 9455062 - 9455002
Alignment:
| Q |
130 |
cctcctcatggtggtcctcatgagatctaactttgtcgttatcttcctcctttgtattatc |
190 |
Q |
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| T |
9455062 |
cctcctcatggtggtcctcgtgagattaaacattatcgttatcttcctcctctgtcttatc |
9455002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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