View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_high_14 (Length: 496)
Name: NF1370_high_14
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 12 - 468
Target Start/End: Complemental strand, 4122830 - 4122374
Alignment:
| Q |
12 |
ttgaggactctccgaatcatccatattgttgctctttttaattatatcagaatgtaccattttttatgacaaaataggctgctgccgataaagcatttgt |
111 |
Q |
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| T |
4122830 |
ttgaggactctccgaatcatccatattgttgctctttttaattatatcagaatgtaccattttttatgacaaaataggctgctgccgataaagcatttgt |
4122731 |
T |
|
| Q |
112 |
tgaaccagagaaatggatcaagatgagtattctcagtgctgctggctctggtagatttagtagtgacaggaccattcgagagtacgcagagagaacatgg |
211 |
Q |
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| T |
4122730 |
tgaaccagagaagtggatcaagatgagtattctcagtgctgccggctctggtagatttagtagtgacaggaccattcgagagtacgcagagagaacatgg |
4122631 |
T |
|
| Q |
212 |
aaaattgatccttgccaatgccctatctgatctctaatgatccattacacgaagctaacaaattagtaatcatctgtttatttagatgaaagtgttgatt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4122630 |
aaaattgatccttgccaatgccctatctgatctctaatgatccattacacgaagctaacaaattagtaatcatctgtttatttagatgaaagtgttgatt |
4122531 |
T |
|
| Q |
312 |
agaaaattagttttatttttgaaagtctgaagcaataattgtaactgtagctgagcagttatgaagaatcttgtgcagtgagaatcacaaaatcttggct |
411 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4122530 |
agaaaattagttttattttggaaagtctgaagcaataattgtaactgtagttgagcagttatgaggaatcttgtgcagtgagaatcacaaaatcttggct |
4122431 |
T |
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| Q |
412 |
atgcatggctcatggtatgtaggttctctggacgaataaaagtgcacctttgcttct |
468 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||| |||| |
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| T |
4122430 |
atgcatggctcatcgcatgtaggttctctggacgaataaaagtgcacctttggttct |
4122374 |
T |
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