View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_high_19 (Length: 476)
Name: NF1370_high_19
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 29 - 465
Target Start/End: Complemental strand, 27324848 - 27324411
Alignment:
| Q |
29 |
aaaagattggtgcaaaagttgcaagcaggttagccctctgtctctggcagtacttactaggcctttctacatttgcttcataatatatgtcccttttata |
128 |
Q |
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| T |
27324848 |
aaaagattggtgcaaaagttgcaagcaggttagccctccgtctctggccgtacttactaggcccttctacatttgcttcataatatatgtccctttttta |
27324749 |
T |
|
| Q |
129 |
gtacatttatacctaacattttcccaatgctctcacatatatcatttatctgtttatcatagaaggtgcattggggttgtattgtactctcctggc-ata |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27324748 |
gtacatttatacctaacattttcccaatgctctcacatatatcatttatctgtttatcatagaaggtgcattggggttgtattgtactctcctggttata |
27324649 |
T |
|
| Q |
228 |
gttcctcttatgtttcaaaatatataacgttatagatttcgaggttcttgagttaaaagaccggtaaatatttgcatcatgcggaaaagcttccttaatt |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
27324648 |
gttcctcttatgtttcaaaatatataacgttatagatttcgaggttcttgagttaaaagaccgctaaatatttgcatcatgtggaaaagcttccttaatt |
27324549 |
T |
|
| Q |
328 |
atatcactactctgcaagatttatctttagaatgaagaatcctatttatattatttgaattctcatattcttgctgctaaacaattaagctaatttctgt |
427 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27324548 |
atatcactactctgcaagatttatctttagaataaagaatcctatttatatcatttgaattctcatattcttgctgctaaacaattaagctaatttctgt |
27324449 |
T |
|
| Q |
428 |
tcttcactacaatctttgcagaaaatcacagagttcat |
465 |
Q |
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| |||||||||||||||||||||||||||||||||||| |
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| T |
27324448 |
tgttcactacaatctttgcagaaaatcacagagttcat |
27324411 |
T |
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