View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_high_32 (Length: 403)
Name: NF1370_high_32
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 130 - 389
Target Start/End: Original strand, 7035151 - 7035410
Alignment:
| Q |
130 |
atgcagatatccagtagtagcataagtttatttgtttatctcactctctttatgctgatattttctcctactagttccagccctgttcctcagataaaat |
229 |
Q |
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| T |
7035151 |
atgcagatatcctgtagtagcataagtttatttgtttatctcactctctttatgctgatattttctcctactagttccagccctgttcctcagataaaat |
7035250 |
T |
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| Q |
230 |
atgatgtctttgttagcttcaggggtagtgatattcgcaaaaatttccttagccatgttcttgaggctttttcgcgaaagaaaattgtagtcttttctga |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7035251 |
atgatgtctttgttagcttcaggggtagtgatattcgcaaaaatttccttagccatgttcttgaggctttttcgcgaaagaaaattgtagtcttttctga |
7035350 |
T |
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| Q |
330 |
caagaagcttcgaggaggagatgaaatatcagaacttcatacagcaattgaaaaatcatt |
389 |
Q |
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| T |
7035351 |
caagaagcttcgaggaggagacgaaatatcagaacttcatacagcaattgaaaaatcatt |
7035410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 187 - 392
Target Start/End: Complemental strand, 7078722 - 7078517
Alignment:
| Q |
187 |
atattttctcctactagttccagccctgttcctcagataaaatatgatgtctttgttagcttcaggggtagtgatattcgcaaaaatttccttagccatg |
286 |
Q |
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| T |
7078722 |
atattttctccttctacttctatccctgctcctcagataaaatatgatgtctttgttagctttagaggcagtgacattcgcaaacacttccttagccatg |
7078623 |
T |
|
| Q |
287 |
ttcttgaggctttttcgcgaaagaaaattgtagtcttttctgacaagaagcttcgaggaggagatgaaatatcagaacttcatacagcaattgaaaaatc |
386 |
Q |
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| T |
7078622 |
tcctcgaagctttgtcgcgaaagagaatcgttgttttttctgacaaaaagcttaaaacaggagatgaattatcagcaattcaaagagcaattgaaaaatc |
7078523 |
T |
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| Q |
387 |
attcat |
392 |
Q |
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|||||| |
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| T |
7078522 |
attcat |
7078517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 186 - 389
Target Start/End: Original strand, 7028505 - 7028708
Alignment:
| Q |
186 |
gatattttctcctactagttccagccctgttcctcagataaaatatgatgtctttgttagcttcaggggtagtgatattcgcaaaaatttccttagccat |
285 |
Q |
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||||||||||||| ||| ||| | ||||| |||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| |
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| T |
7028505 |
gatattttctccttctacttctatccctgcacctcagataaaatatgatgtctttgttagctttagaggtagtgacattcgcaaaaatttccttagccat |
7028604 |
T |
|
| Q |
286 |
gttcttgaggctttttcgcgaaagaaaattgtagtcttttctgacaagaagcttcgaggaggagatgaaatatcagaacttcatacagcaattgaaaaat |
385 |
Q |
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|| || || ||||| ||||||||| ||| | || ||||||||||| ||||| | |||||| ||| |||||| | |||| | |||||||||||||| |
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| T |
7028605 |
gtcctcgacgctttgtcgcgaaagggaatcattgttttttctgacaaaaagctaataacaggagacgaattatcagcaattcaaagagcaattgaaaaat |
7028704 |
T |
|
| Q |
386 |
catt |
389 |
Q |
| |
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|||| |
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| T |
7028705 |
catt |
7028708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 221 - 392
Target Start/End: Original strand, 7020934 - 7021108
Alignment:
| Q |
221 |
agataaaatatgatgtctttgttagcttcaggggtagtgatattcgcaaaaatttccttagccatgttcttgaggctttttcgcgaaagaaaattgtagt |
320 |
Q |
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|||||||| |||||||||||||||||||||||||| |||| |||| |||||||||||||||||| |||| |||||||||||||||| |||| || |
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| T |
7020934 |
agataaaacatgatgtctttgttagcttcaggggtgaggatacccgcagaaatttccttagccatgtccttgtggctttttcgcgaaagcaaataaatgt |
7021033 |
T |
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| Q |
321 |
cttttctgacaagaagcttcgaggaggagatgaaatatcag---aacttcatacagcaattgaaaaatcattcat |
392 |
Q |
| |
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|||||||||||||| ||| || |||||||||||||||| ||||| || ||||||||||||||||||||| |
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| T |
7021034 |
attttctgacaagaaacttgaagaaggagatgaaatatcaccaaaacttaatgaagcaattgaaaaatcattcat |
7021108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 7028415 - 7028456
Alignment:
| Q |
138 |
atccagtagtagcataagtttatttgtttatctcactctctt |
179 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
7028415 |
atccagtagtagcataagtttgtttctttatctcactctctt |
7028456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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