View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1370_high_33 (Length: 396)

Name: NF1370_high_33
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1370_high_33
NF1370_high_33
[»] chr8 (7 HSPs)
chr8 (131-295)||(38313925-38314089)
chr8 (131-296)||(38306583-38306748)
chr8 (148-297)||(38321448-38321597)
chr8 (131-297)||(38326181-38326347)
chr8 (131-278)||(38317336-38317483)
chr8 (131-278)||(38300686-38300833)
chr8 (140-278)||(38309342-38309480)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 9e-86; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 131 - 295
Target Start/End: Original strand, 38313925 - 38314089
Alignment:
Q  131 aactagatccatcaacttgtgaacggaagttgcaaaaagtaaagacaaagttgtacatgctatttgctaagtactctagcaaaagtacttcttctagggt 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38313925 aactagatccatcaacttgtgaacggaagttgcaaaaagtaaagacaaagttgtacatgctatttgccaagtactctagcaaaagtacttcttctagggt 38314024  T
Q  231 gcaaacaactatttagggccaatcttctaccatgccattgcaaaagaactctgagtcttcatctc 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38314025 gcaaacaactatttagggccaatcttctaccatgccattgcaaaagaactctgagtcttcatctc 38314089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 131 - 296
Target Start/End: Original strand, 38306583 - 38306748
Alignment:
Q  131 aactagatccatcaacttgtgaacggaagttgcaaaaagtaaagacaaagttgtacatgctatttgctaagtactctagcaaaagtacttcttctagggt 230  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||| |  |    
T  38306583 aactcgatccatcaacttgtgaacggaagttgcaaaaagtaaagacaaagttgtacatgctatttgacaagtattctagcaaaagtacttcttctggtat 38306682  T
Q  231 gcaaacaactatttagggccaatcttctaccatgccattgcaaaagaactctgagtcttcatctca 296  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38306683 gcaaacaactgttcagggccaatcttctaccatgccattgcaaaagaactctgagtctttatctca 38306748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 148 - 297
Target Start/End: Original strand, 38321448 - 38321597
Alignment:
Q  148 tgtgaacggaagttgcaaaaagtaaagacaaagttgtacatgctatttgctaagtactctagcaaaagtacttcttctagggtgcaaacaactatttagg 247  Q
    |||||| ||||||||||| |||||||||  |||||||||||||||||||  ||||| ||||||||||||| ||||||| ||||||||| ||||||| |||    
T  38321448 tgtgaaaggaagttgcaagaagtaaagagtaagttgtacatgctatttgacaagtattctagcaaaagtatttcttctggggtgcaaagaactattcagg 38321547  T
Q  248 gccaatcttctaccatgccattgcaaaagaactctgagtcttcatctcac 297  Q
     | ||||||||| |||||||||||||||||| |   ||||||||||||||    
T  38321548 acgaatcttctagcatgccattgcaaaagaaattgaagtcttcatctcac 38321597  T

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Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 131 - 297
Target Start/End: Original strand, 38326181 - 38326347
Alignment:
Q  131 aactagatccatcaacttgtgaacggaagttgcaaaaagtaaagacaaagttgtacatgctatttgctaagtactctagcaaaagtacttcttctagggt 230  Q
    |||| ||| ||||||| |||||| ||||||||||| |||||| ||| |||||||||||||||||||  ||||| |||||| || ||||||||||| |  |    
T  38326181 aacttgatgcatcaacctgtgaaaggaagttgcaacaagtaaggacgaagttgtacatgctatttggcaagtattctagccaacgtacttcttctggcat 38326280  T
Q  231 gcaaacaactatttagggccaatcttctaccatgccattgcaaaagaactctgagtcttcatctcac 297  Q
    ||||| |||| || ||||||||||||| |||||| ||||||||||||||||  |||||| |||||||    
T  38326281 gcaaagaactgttcagggccaatcttcgaccatgtcattgcaaaagaactccaagtctttatctcac 38326347  T

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Target: chr8; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 131 - 278
Target Start/End: Original strand, 38317336 - 38317483
Alignment:
Q  131 aactagatccatcaacttgtgaacggaagttgcaaaaagtaaagacaaagttgtacatgctatttgctaagtactctagcaaaagtacttcttctagggt 230  Q
    |||| ||||||||||| || || | ||||||||||  |||||||| ||||||||||||||||||||  ||||| ||||||||||| ||||||||| |  |    
T  38317336 aacttgatccatcaacctgcgagcagaagttgcaactagtaaagagaaagttgtacatgctatttgacaagtattctagcaaaagcacttcttctggcct 38317435  T
Q  231 gcaaacaactatttagggccaatcttctaccatgccattgcaaaagaa 278  Q
      ||| ||||| | ||| ||||||||||||||||||||||||||||||    
T  38317436 aaaaagaactactcaggaccaatcttctaccatgccattgcaaaagaa 38317483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 131 - 278
Target Start/End: Original strand, 38300686 - 38300833
Alignment:
Q  131 aactagatccatcaacttgtgaacggaagttgcaaaaagtaaagacaaagttgtacatgctatttgctaagtactctagcaaaagtacttcttctagggt 230  Q
    |||| ||| |||||||  ||||| ||||||||||| |||||||||  |||||||||||||||||||  ||||| ||||||||||||||| ||||| | ||    
T  38300686 aacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttgacaagtattctagcaaaagtactccttcttgcgt 38300785  T
Q  231 gcaaacaactatttagggccaatcttctaccatgccattgcaaaagaa 278  Q
    ||||| || |||  ||| ||||||||||| ||||||||| ||| ||||    
T  38300786 gcaaagaattatccaggaccaatcttctagcatgccatttcaagagaa 38300833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 140 - 278
Target Start/End: Original strand, 38309342 - 38309480
Alignment:
Q  140 catcaacttgtgaacggaagttgcaaaaagtaaagacaaagttgtacatgctatttgctaagtactctagcaaaagtacttcttctagggtgcaaacaac 239  Q
    ||||||| || ||| ||||||||||  |||||||||  ||||||||||||||||||   ||| | ||| ||||||||||||||||| | ||||||| |||    
T  38309342 catcaacctgcgaaaggaagttgcagcaagtaaagagcaagttgtacatgctatttcacaagaattcttgcaaaagtacttcttctggcgtgcaaagaac 38309441  T
Q  240 tatttagggccaatcttctaccatgccattgcaaaagaa 278  Q
     ||| ||| |||||||||||   ||||||||||||||||    
T  38309442 aattcaggaccaatcttctagtgtgccattgcaaaagaa 38309480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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