View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1370_high_4 (Length: 607)
Name: NF1370_high_4
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 117 - 599
Target Start/End: Original strand, 1135644 - 1136126
Alignment:
| Q |
117 |
taaaaaatctgatgggttgttgtcgaatcgagaattagacttatagcatgtccaaaaggttggacctgagtcatgattgaagccgttcatattcaaacta |
216 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1135644 |
taaaaaatctgatgggttgttgtcgactcgagaattagacttataacatgtccaaaaggttggacctgagtcatgattgaagccgttcatattcaaacta |
1135743 |
T |
|
| Q |
217 |
atccaaattaaaatcgcaaactaatccaaaataactcaagaccatgcaaggtccaacaaatcaaatttgtttggatgtcttttccaaaaattgctcagat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1135744 |
atccaaattaaaatcgcaaactaatccaaaataactcaaaaccatgcaaagtctaacaaatcaaatttgtttggatgtcttttccaaaaattgctcagat |
1135843 |
T |
|
| Q |
317 |
ttgattggggcgtctatccagtgtcaaagtttctaattacactgggttagcaaaaatatataactaaagattcatatttatgttggacatgtctcaaata |
416 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1135844 |
ttgattggggcgtctatccaatgtcaaagtttctaattacactaggttagcaaaaatatataactaaagattcatatttatgttggacatgtctcaaata |
1135943 |
T |
|
| Q |
417 |
ggataacatttgatggagggaacctaggagaaccctaaataaataaaatttgaataagaagtttaggcgagctccgctccaagtgctcattagggttagt |
516 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1135944 |
ggataacattcgatggagggaacctatgagaaccctaaataaataaaatttgaataagaagtttaggcgagctccgctccaagtgctcattagggttagt |
1136043 |
T |
|
| Q |
517 |
gcatatgtcaagctcaaagagtttttgcggggatcacccattaaaaatgtcctcacttcaacaacgataatttaacctatgat |
599 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1136044 |
gcatatgtcaagctcaaagagtttttacggggatcacccattaaaaatgtcctcacttcaacaacgataatttaacctatgat |
1136126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 52921876 - 52921920
Alignment:
| Q |
203 |
tcatattcaaactaatccaaattaaaatcgcaaactaatccaaaa |
247 |
Q |
| |
|
|||||| ||||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
52921876 |
tcatatccaaaccaatccaaattgaaaccgcaaactaatccaaaa |
52921920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 9e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 35401728 - 35401620
Alignment:
| Q |
6 |
aagatgtactctaaattaagtaacactagtgttgtgcataaatcaacttctatacatgcatagctatattacctgcaaatgactcttcacatgtgcaatt |
105 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35401728 |
aagatttactctaaattaagtaacactagtgttgtccataaatcaacttctatacatgcatagctatattacctgcaaatgactcttcacatgtgcaatt |
35401629 |
T |
|
| Q |
106 |
ctaagtcct |
114 |
Q |
| |
|
||||||||| |
|
|
| T |
35401628 |
ctaagtcct |
35401620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2297 times since January 2019
Visitors: 1237