View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_high_42 (Length: 363)
Name: NF1370_high_42
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_high_42 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 26474832 - 26474574
Alignment:
| Q |
1 |
ctagacgcccctcaacttctggactttgaagaagacaccttacccttaaccatccaaaaaacttgaatctagatgctaacttccgatctcgaaataaaag |
100 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26474832 |
ctagacgcccctcaacttctggactttgaaaaaaacaccttacccttaaccatccaaaaaacttaaatctagatgctaacttccgatctcgaaataaaag |
26474733 |
T |
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| Q |
101 |
caatcggcccaccaatatccataagacaaatttcatagtagttaacaagtggaatagtagcacaaatcatagttgtatgttaggagtttagactcgtttt |
200 |
Q |
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| T |
26474732 |
cgatcggcccaccaatatccataaaacaaatttcatagtagttaacaagtggaatagtagcgcaaatcatagttgtatgttaggagtttagactagtttt |
26474633 |
T |
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| Q |
201 |
ttgtattgagtttttgtcatttgattaaatctttacataaatttgttcaaatttccata |
259 |
Q |
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| T |
26474632 |
ttgtattgagtttttgtcatttgattaaatctttacataaatttgttcaaatttccata |
26474574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 26127907 - 26127846
Alignment:
| Q |
54 |
ccaaaaaacttgaatctagatgctaacttccgatctcgaaataaaagcaatcggcccaccaa |
115 |
Q |
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| T |
26127907 |
ccaaaaatcttgaatctagatattgacttccgatctcgaagcaaaaacaatcgacccaccaa |
26127846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 64416 - 64538
Alignment:
| Q |
44 |
ccttaaccatccaaaaaacttgaatctagatgctaacttccgatctcgaaataaaagcaatcggcccaccaatatccataagacaaatttcatagtagtt |
143 |
Q |
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||||||||||||||||||| |||| ||||| | ||||||||||||| || |||||| |||| |||||||||||||| ||||||||| |||| |||||| |
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| T |
64416 |
ccttaaccatccaaaaaacatgaaactagacgtcaacttccgatctcaaagcaaaagcgatcgacccaccaatatccagaagacaaatctcatggtagtt |
64515 |
T |
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| Q |
144 |
aacaagtggaatagtagcacaaa |
166 |
Q |
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|||| |||||| ||||||||||| |
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| T |
64516 |
aacacgtggaacagtagcacaaa |
64538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 69557 - 69679
Alignment:
| Q |
44 |
ccttaaccatccaaaaaacttgaatctagatgctaacttccgatctcgaaataaaagcaatcggcccaccaatatccataagacaaatttcatagtagtt |
143 |
Q |
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||||||||||||||||||| |||| ||||| | ||||||||||||| || |||||| |||| |||||||||||||| ||||||||| |||| |||||| |
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| T |
69557 |
ccttaaccatccaaaaaacatgaaactagacgtcaacttccgatctcaaagcaaaagcgatcgacccaccaatatccagaagacaaatctcatggtagtt |
69656 |
T |
|
| Q |
144 |
aacaagtggaatagtagcacaaa |
166 |
Q |
| |
|
|||| |||||| ||||||||||| |
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| T |
69657 |
aacacgtggaacagtagcacaaa |
69679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 15841036 - 15841085
Alignment:
| Q |
44 |
ccttaaccatccaaaaaacttgaatctagatgctaacttccgatctcgaa |
93 |
Q |
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||||||||||| ||||||||||| ||||| ||||||||||||||||||| |
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| T |
15841036 |
ccttaaccatcacaaaaacttgaaactagacgctaacttccgatctcgaa |
15841085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 30127219 - 30127151
Alignment:
| Q |
44 |
ccttaaccatccaaaaaacttgaatctagatgctaacttccgatctcgaaataaaagcaatcggcccaccaa |
115 |
Q |
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||||||||| || ||||||||||| ||||| |||||||| |||||||| ||||||||||||| |||||| |
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| T |
30127219 |
ccttaaccaacccaaaaacttgaaactagacactaacttctgatctcga---aaaagcaatcggctcaccaa |
30127151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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