View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1370_high_48 (Length: 339)
Name: NF1370_high_48
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_high_48 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 105 - 330
Target Start/End: Original strand, 38252470 - 38252695
Alignment:
| Q |
105 |
tatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccattagcat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38252470 |
tatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccattagcat |
38252569 |
T |
|
| Q |
205 |
ggttgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtcaaatta |
304 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38252570 |
ggctgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtcaaatta |
38252669 |
T |
|
| Q |
305 |
ttaagctaagatacatgtagaattat |
330 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
38252670 |
ttaagctaagatacatgtaaaattat |
38252695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 105 - 330
Target Start/End: Complemental strand, 43157072 - 43156847
Alignment:
| Q |
105 |
tatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccattagcat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43157072 |
tatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccattagcat |
43156973 |
T |
|
| Q |
205 |
ggttgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtcaaatta |
304 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43156972 |
ggctgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtcaaatta |
43156873 |
T |
|
| Q |
305 |
ttaagctaagatacatgtagaattat |
330 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
43156872 |
ttaagctaagatacatgtaaaattat |
43156847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 105 - 330
Target Start/End: Original strand, 28245655 - 28245880
Alignment:
| Q |
105 |
tatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccattagcat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28245655 |
tatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccattagcat |
28245754 |
T |
|
| Q |
205 |
ggttgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtcaaatta |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28245755 |
ggttgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcaaaacaagatactccatcaacctaaaatgattatgtcaaatta |
28245854 |
T |
|
| Q |
305 |
ttaagctaagatacatgtagaattat |
330 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
28245855 |
ttaagctaagatacatgtaaaattat |
28245880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 105 - 330
Target Start/End: Complemental strand, 11474396 - 11474171
Alignment:
| Q |
105 |
tatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccattagcat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11474396 |
tatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttctttatgaatttgtttttgaaattaccattagcat |
11474297 |
T |
|
| Q |
205 |
ggttgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtcaaatta |
304 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11474296 |
ggctgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtcaaatta |
11474197 |
T |
|
| Q |
305 |
ttaagctaagatacatgtagaattat |
330 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
11474196 |
ttaagctaagatacatgtaaaattat |
11474171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 105 - 321
Target Start/End: Original strand, 50019144 - 50019363
Alignment:
| Q |
105 |
tatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccattagcat |
204 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
50019144 |
tattgcctacattaataacaacttaaaaattagaatcacgatacttgttaaatgtatgaatagttccttatgaatttgcttttgaaattaccattagcat |
50019243 |
T |
|
| Q |
205 |
ggttgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtagg---cgcagaacaagatactccatcaacctaaaatgattatgtcaaa |
301 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
50019244 |
gacaatgtaattgacttgatcctcatgtgcttgtgggggctcataagttggaggcgacgcagaacaagatactccatcaaactaaaatgattatgtaaaa |
50019343 |
T |
|
| Q |
302 |
ttattaagctaagatacatg |
321 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
50019344 |
ttattaagctaagatacatg |
50019363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 10465011 - 10465068
Alignment:
| Q |
226 |
ctcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacc |
283 |
Q |
| |
|
|||| ||||| | |||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
10465011 |
ctcacgtgctagcgggggctcataagttggaggcgcggaacaagatactccatcaacc |
10465068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 43734663 - 43734720
Alignment:
| Q |
226 |
ctcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacc |
283 |
Q |
| |
|
|||| ||||| | |||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
43734663 |
ctcacgtgctagcgggggctcataagttggaggcgcggaacaagatactccatcaacc |
43734720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 50673558 - 50673599
Alignment:
| Q |
242 |
ggctcataagttgtaggcgcagaacaagatactccatcaacc |
283 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
50673558 |
ggctcataagttggaggcgcggaacaagatactccatcaacc |
50673599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 105 - 330
Target Start/End: Original strand, 19307332 - 19307557
Alignment:
| Q |
105 |
tatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccattagcat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19307332 |
tatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccattagcat |
19307431 |
T |
|
| Q |
205 |
ggttgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtcaaatta |
304 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19307432 |
ggctgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcaaaacaagatactccatcaacctaaaatgattatgtcaaatta |
19307531 |
T |
|
| Q |
305 |
ttaagctaagatacatgtagaattat |
330 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
19307532 |
ttaagctaagatacatgtaaaattat |
19307557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 105 - 301
Target Start/End: Original strand, 10123882 - 10124078
Alignment:
| Q |
105 |
tatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccattagcat |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10123882 |
tatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcaatatgaatttgtttttgaaattaccattagcat |
10123981 |
T |
|
| Q |
205 |
ggttgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtcaaa |
301 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10123982 |
ggctgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcataacaagatactccatcaacctaaaatgattatgtcaaa |
10124078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 105 - 330
Target Start/End: Complemental strand, 25382510 - 25382284
Alignment:
| Q |
105 |
tatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccattagcat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25382510 |
tatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttccttatgaatttgtttttgaaattaccattagcat |
25382411 |
T |
|
| Q |
205 |
ggttgtgtaattgacttgagactcatgtgcttgtg-ggggctcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtcaaatt |
303 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25382410 |
ggctgtgtaattgacttgagacttatgtgcttgtggggggatcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtcaaatt |
25382311 |
T |
|
| Q |
304 |
attaagctaagatacatgtagaattat |
330 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
25382310 |
attaagctaagatacatgtaaaattat |
25382284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 110 - 283
Target Start/End: Complemental strand, 48794334 - 48794161
Alignment:
| Q |
110 |
cctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccattagcatggttg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
48794334 |
cctacattaataacaacttaaaaattagcatcacgatacatgttaaatgtatgtatagttccttatgaatttgtttttgaaattaccatcagcatggctg |
48794235 |
T |
|
| Q |
210 |
tgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacc |
283 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
48794234 |
tgtaattgaattgatcctcatgtgcttgtgggggcgcataagttggaggtgcagaacaagatactccatcaacc |
48794161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 283
Target Start/End: Complemental strand, 25862800 - 25862743
Alignment:
| Q |
226 |
ctcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacc |
283 |
Q |
| |
|
|||| ||||| | |||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
25862800 |
ctcacgtgctagcgggggctcataagttggaggcgcggaacaagatactccatcaacc |
25862743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 27979145 - 27979093
Alignment:
| Q |
226 |
ctcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccat |
278 |
Q |
| |
|
|||| ||||| | |||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
27979145 |
ctcacgtgctagcgggggctcataagttggaggcgcggaacaagatactccat |
27979093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 5911543 - 5911504
Alignment:
| Q |
239 |
gggggctcataagttgtaggcgcagaacaagatactccat |
278 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
5911543 |
gggggctcataagttggaggcgcggaacaagatactccat |
5911504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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