View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_high_5 (Length: 583)
Name: NF1370_high_5
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 136 - 573
Target Start/End: Original strand, 46303309 - 46303746
Alignment:
| Q |
136 |
ctccttgactgggatgatgtacacaatgatgacttttgctcatggcgtggagttttctgtgataacgccagtcatgctcttactgttgtatctctgtgag |
235 |
Q |
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| T |
46303309 |
ctccttgactgggatgatgtacacaatgatgacttttgctcatggcgtggagttttctgtgataacgccagtcatgctcttactgttgtatctctgtgag |
46303408 |
T |
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| Q |
236 |
tcctttatccctcggtctatatccatcacttgtcttactctctcattaccaacaattttttgtatttgttaatctctaatgnnnnnnncatattaatgaa |
335 |
Q |
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| T |
46303409 |
tcctttatccctcggtctatatccatcacttgtcttactctctcattaccaacaattttttgtatttgttaatctctaatgtttttttcatattaatgaa |
46303508 |
T |
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| Q |
336 |
ggaatttgtcaagcttgaaccttggtggtgagatatcaccagcaattggtgatttaagaaacttgcaatccatgtatgtcacctcttacttaacattcta |
435 |
Q |
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| T |
46303509 |
ggaatttgtcaagcttgaaccttggtggtgagatatcaccagcaattggtgatttaagaaacttgcaatccatgtatgtcacctcttacttaacattcta |
46303608 |
T |
|
| Q |
436 |
tgcatctctcataatttagattgaagtcgtgttcactgctcgaaataacactgacccatgtcgttacatttaattgaatactttcatattctaaaaattt |
535 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46303609 |
tgcatctctcatactttagattgaagtcgtgttcactgcttgaaataacactgacccatgtcgttacatttaattgaatactttcatattctaaaaattt |
46303708 |
T |
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| Q |
536 |
acttgtgtcgatgtgttagtgtctcgtttgtgcctttg |
573 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |
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| T |
46303709 |
acttgtgtcgatgtgttagtgtctcgtttgtgtctttg |
46303746 |
T |
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