View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1370_high_51 (Length: 335)

Name: NF1370_high_51
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1370_high_51
NF1370_high_51
[»] chr1 (6 HSPs)
chr1 (55-335)||(8780422-8780702)
chr1 (195-324)||(15539846-15539976)
chr1 (222-331)||(42510606-42510716)
chr1 (222-324)||(6029284-6029387)
chr1 (214-324)||(42512745-42512856)
chr1 (200-331)||(16451208-16451340)
[»] chr8 (6 HSPs)
chr8 (201-271)||(17599066-17599136)
chr8 (222-324)||(8672978-8673081)
chr8 (259-324)||(29611016-29611081)
chr8 (222-324)||(7591370-7591473)
chr8 (222-324)||(15001545-15001648)
chr8 (202-289)||(39061390-39061477)
[»] chr4 (13 HSPs)
chr4 (195-324)||(50729416-50729546)
chr4 (197-324)||(39078743-39078871)
chr4 (226-324)||(36497299-36497398)
chr4 (251-324)||(26083421-26083495)
chr4 (195-324)||(52949802-52949932)
chr4 (214-273)||(33552735-33552795)
chr4 (214-324)||(36886014-36886125)
chr4 (234-324)||(37865835-37865926)
chr4 (214-324)||(38812602-38812713)
chr4 (234-324)||(42870053-42870144)
chr4 (222-324)||(50178393-50178496)
chr4 (214-331)||(4325866-4325984)
chr4 (222-273)||(23522013-23522065)
[»] chr3 (8 HSPs)
chr3 (195-324)||(3867524-3867654)
chr3 (222-324)||(19906842-19906945)
chr3 (196-324)||(24571361-24571490)
chr3 (214-324)||(29584955-29585066)
chr3 (222-324)||(40094583-40094686)
chr3 (222-316)||(41682955-41683050)
chr3 (222-314)||(3695209-3695302)
chr3 (259-331)||(33364718-33364790)
[»] chr7 (5 HSPs)
chr7 (214-324)||(44748778-44748889)
chr7 (259-324)||(48445604-48445669)
chr7 (242-324)||(329553-329636)
chr7 (234-324)||(21784954-21785045)
chr7 (223-324)||(47953273-47953375)
[»] scaffold0280 (1 HSPs)
scaffold0280 (195-324)||(13574-13704)
[»] chr2 (5 HSPs)
chr2 (223-324)||(6896247-6896349)
chr2 (250-324)||(35170149-35170224)
chr2 (195-324)||(9732811-9732941)
chr2 (214-271)||(13249297-13249354)
chr2 (198-289)||(83384-83476)
[»] chr5 (5 HSPs)
chr5 (222-273)||(39918637-39918689)
chr5 (222-324)||(11963420-11963523)
chr5 (222-324)||(32528794-32528897)
chr5 (251-324)||(18470371-18470445)
chr5 (259-324)||(37148541-37148606)
[»] chr6 (2 HSPs)
chr6 (222-324)||(3259762-3259865)
chr6 (259-331)||(34176902-34176974)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 55 - 335
Target Start/End: Original strand, 8780422 - 8780702
Alignment:
Q  55 tatgacatgtttcataaactgctttcagcttaagctctataagatagtttacgaaaacaaaacaatttgaagctctataagatttgtttcgactactttc 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8780422 tatgacatgtttcataaactgctttcagcttaagctctataagatagtttacgaaaacaaaacaatttgaagctctataagatttgtttcgactactttc 8780521  T
Q  155 atttattgtagatccttggaaattttagaaatacaattgtggtgtgtttgatctattagaaaataagggacaggacaagacaactgtagttgtactgtgt 254  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8780522 gtttattgtagatccttggaaattttagaaatacaattgtggtgtgtttgatctattagaaaataagggacaagacaagacaactgtagttgtactgtgt 8780621  T
Q  255 ttgattgtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatttttgcctctcattaa 335  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8780622 ttgattgtaaaactgtttcatggacataacaaactggggacaagagacatgccaaaaactgaaatttttgcctctcattaa 8780702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 324
Target Start/End: Original strand, 15539846 - 15539976
Alignment:
Q  195 ggtgtgtttgatctattagaaaataagggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactgggg 293  Q
    |||| ||||||| | ||| ||||| | ||||||||||  ||||||  |||||| | |||||||||| |||||||||||||  ||||| |||||||||| |    
T  15539846 ggtgcgtttgatttgttaaaaaatgaaggacaggacagaacaactccagttgtccagtgtttgatttgtaaaactgtttcaaggacagaacaaactggag 15539945  T
Q  294 acaagagacatgccaaaaactgaaatttttg 324  Q
     ||||||||| | ||||| |||||| |||||    
T  15539946 gcaagagacaggacaaaacctgaaacttttg 15539976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 331
Target Start/End: Complemental strand, 42510716 - 42510606
Alignment:
Q  222 ggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatt 320  Q
    |||||||||| ||||||| ||||||| | |||||||||| |||||||||||||  | |||  ||||||||| |||||| |||| | |||||||| | |||    
T  42510716 ggacaggacaggacaactctagttgtccagtgtttgattcgtaaaactgtttcaggtacaggacaaactggagacaagggacaggacaaaaactcatatt 42510617  T
Q  321 tttgcctctca 331  Q
    |||| ||||||    
T  42510616 tttgtctctca 42510606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 324
Target Start/End: Original strand, 6029284 - 6029387
Alignment:
Q  222 ggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatt 320  Q
    ||||||||||  ||||||  |||||| | |||||||||| |||||||||||||  ||||| |||||||||  | |||| |||| | ||||||||||||||    
T  6029284 ggacaggacagaacaactccagttgtccagtgtttgatttgtaaaactgtttcagggacagaacaaactgaaggcaagggacaggacaaaaactgaaatt 6029383  T
Q  321 tttg 324  Q
    ||||    
T  6029384 tttg 6029387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 324
Target Start/End: Original strand, 42512745 - 42512856
Alignment:
Q  214 aaaataagggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaa 312  Q
    ||||||| ||||||||||  ||||||  |||||| | |||||||||| |||||||||||||  | |||  ||||||||| | ||||||||| | ||||||    
T  42512745 aaaataaaggacaggacagaacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaaaa 42512844  T
Q  313 ctgaaatttttg 324  Q
    |||| |||||||    
T  42512845 ctgatatttttg 42512856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 331
Target Start/End: Complemental strand, 16451340 - 16451208
Alignment:
Q  200 gtttgatctattagaaaataagggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaag 298  Q
    ||||||| | ||| ||||| | ||||||||||  |||||| ||||||| |  ||||||||| |||||||||||||  | |||  ||||||||| | ||||    
T  16451340 gtttgatttgttaaaaaatgaaggacaggacataacaactctagttgtccaatgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaag 16451241  T
Q  299 agacatgccaaaaactgaaatttttgcctctca 331  Q
     |||| | |||||||| | ||||||| ||||||    
T  16451240 ggacaggacaaaaactcatatttttgtctctca 16451208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 17599136 - 17599066
Alignment:
Q  201 tttgatctattagaaaataagggacaggacaagacaactgtagttgtactgtgtttgattgtaaaactgtt 271  Q
    ||||||||  || |||||||||||| |||||||||||||| ||||||| ||||||||||| ||||||||||    
T  17599136 tttgatctgctaaaaaataagggactggacaagacaactgcagttgtagtgtgtttgattttaaaactgtt 17599066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 324
Target Start/End: Original strand, 8672978 - 8673081
Alignment:
Q  222 ggacaggacaagacaactgtagttgtactgtgtttga-ttgtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatt 320  Q
    ||||||||||| |||||| ||||||| | |||||||| |||||||||||||||  | |||| ||||||||| | |||| |||| | |||||||| | |||    
T  8672978 ggacaggacaaaacaactatagttgtccagtgtttgatttgtaaaactgtttcaggtacatgacaaactggaggcaagggacaggacaaaaactcatatt 8673077  T
Q  321 tttg 324  Q
    ||||    
T  8673078 tttg 8673081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 29611016 - 29611081
Alignment:
Q  259 ttgtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatttttg 324  Q
    |||||||||||||||  ||||| |||||||||| | |||| |||| | ||||||||||||||||||    
T  29611016 ttgtaaaactgtttcagggacagaacaaactggaggcaagggacaggacaaaaactgaaatttttg 29611081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 324
Target Start/End: Original strand, 7591370 - 7591473
Alignment:
Q  222 ggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatt 320  Q
    ||||||||||  ||||||  |||||| | |||||||||| |||||||||||||  | |||  ||||||||| | ||||||||| | |||||||||| |||    
T  7591370 ggacaggacagaacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaaaactgatatt 7591469  T
Q  321 tttg 324  Q
    ||||    
T  7591470 tttg 7591473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 324
Target Start/End: Complemental strand, 15001648 - 15001545
Alignment:
Q  222 ggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatt 320  Q
    ||||||||||  ||||||  |||||| | |||||||||| |||||||||||||  |||||  ||||||||| | ||| |||||   ||||||||||||||    
T  15001648 ggacaggacagaacaacttcagttgtccagtgtttgatttgtaaaactgtttcagggacaggacaaactggaggcaatagacagaacaaaaactgaaatt 15001549  T
Q  321 tttg 324  Q
    ||||    
T  15001548 tttg 15001545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 39061390 - 39061477
Alignment:
Q  202 ttgatctattagaaaataagggacaggacaagacaactgtagttgtactgtgtttgattgtaaaactgtttcccggacataacaaact 289  Q
    |||||||| || || ||||||||||  ||| |||||||  ||||||||| | ||| ||||||||| ||||||  ||||||||||||||    
T  39061390 ttgatctactaaaatataagggacaatacatgacaacttcagttgtactatttttaattgtaaaattgtttcagggacataacaaact 39061477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 324
Target Start/End: Original strand, 50729416 - 50729546
Alignment:
Q  195 ggtgtgtttgatctattagaaaataagggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactgggg 293  Q
    |||| ||||||| | ||| ||||| | ||||| ||||  ||||||  |||||| | |||||||||| |||||||||||||  ||||| |||||||||| |    
T  50729416 ggtgcgtttgatttgttaaaaaatgaaggacaagacagaacaacttcagttgtccagtgtttgatttgtaaaactgtttcagggacagaacaaactggag 50729515  T
Q  294 acaagagacatgccaaaaactgaaatttttg 324  Q
     |||| |||||| ||||||||||||||||||    
T  50729516 gcaagggacatgacaaaaactgaaatttttg 50729546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 197 - 324
Target Start/End: Complemental strand, 39078871 - 39078743
Alignment:
Q  197 tgtgtttgatctattagaaaataagggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggac 295  Q
    |||||||||| | ||| ||||| | ||||| ||||  ||||||  |||||| | |||||||||| |||||||||||||  ||||| |||||||||| | |    
T  39078871 tgtgtttgatttgttaaaaaatgaaggacatgacagaacaactccagttgtccagtgtttgatttgtaaaactgtttcagggacagaacaaactggaggc 39078772  T
Q  296 aagagacatgccaaaaactgaaatttttg 324  Q
    |||||| | | ||||| ||||||||||||    
T  39078771 aagagataggacaaaacctgaaatttttg 39078743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 324
Target Start/End: Complemental strand, 36497398 - 36497299
Alignment:
Q  226 aggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatttttg 324  Q
    ||||||| |||||| ||||||| | |||||||||| |||||||||||||  | |||  ||||||||| ||||||||||| | |||||||| | |||||||    
T  36497398 aggacaaaacaactctagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggagacaagagacaggacaaaaactcatatttttg 36497299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 26083495 - 26083421
Alignment:
Q  251 gtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatttttg 324  Q
    |||||||||| |||||| ||||||  ||||| |||||||||| | |||| |||||| ||||||||||||||||||    
T  26083495 gtgtttgatttgtaaaattgtttcagggacagaacaaactggaggcaagggacatgacaaaaactgaaatttttg 26083421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 324
Target Start/End: Complemental strand, 52949932 - 52949802
Alignment:
Q  195 ggtgtgtttgatctattagaaaataagggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactgggg 293  Q
    |||| ||||||| | ||| ||||| | ||||| ||||| |||||| ||||||| | |||||| ||| |||||||||||||  | |||  ||||||||| |    
T  52949932 ggtgcgtttgatttgttaaaaaatgaaggacacgacaaaacaactctagttgtccagtgtttcatttgtaaaactgtttcaggtacaggacaaactggag 52949833  T
Q  294 acaagagacatgccaaaaactgaaatttttg 324  Q
     ||||||||| | |||||||||| |||||||    
T  52949832 gcaagagacaggacaaaaactgatatttttg 52949802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 33552735 - 33552795
Alignment:
Q  214 aaaataagggacaggacaagacaactgtagttgtactgtgtttga-ttgtaaaactgtttc 273  Q
    ||||||| ||||||||||| |||||| ||||||| | |||||||| |||||||||||||||    
T  33552735 aaaataaaggacaggacaaaacaactctagttgttcagtgtttgatttgtaaaactgtttc 33552795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 324
Target Start/End: Complemental strand, 36886125 - 36886014
Alignment:
Q  214 aaaataagggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaa 312  Q
    ||||||| ||||| ||||| |||||| ||||||| | |||||||||| |||||||||||||  | |||  ||||||||| | |||| |||| | ||||||    
T  36886125 aaaataaaggacaagacaaaacaactctagttgtccagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaggacaaaaa 36886026  T
Q  313 ctgaaatttttg 324  Q
    || | |||||||    
T  36886025 ctcatatttttg 36886014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 324
Target Start/End: Complemental strand, 37865926 - 37865835
Alignment:
Q  234 acaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatttttg 324  Q
    |||||| ||||||| | |||||||||| |||||||||||||  | |||| |||| |||| | ||||||||||| |||||||| | |||||||    
T  37865926 acaactctagttgtccagtgtttgatttgtaaaactgtttcaggtacatgacaatctggaggcaagagacatgacaaaaactcatatttttg 37865835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 324
Target Start/End: Complemental strand, 38812713 - 38812602
Alignment:
Q  214 aaaataagggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaa 312  Q
    ||||||| ||||||||||  |||||| ||||||| | |||||||||| |||||||||||||  | |||  ||||||||| | |||| |||| | ||||||    
T  38812713 aaaataaaggacaggacataacaactctagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagggacaggacaaaaa 38812614  T
Q  313 ctgaaatttttg 324  Q
    || | |||||||    
T  38812613 ctcatatttttg 38812602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 324
Target Start/End: Complemental strand, 42870144 - 42870053
Alignment:
Q  234 acaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatttttg 324  Q
    |||||| ||||||| | |||||||||| |||||||||||||  | |||  ||||||||||| ||||||||| | |||||||| | |||||||    
T  42870144 acaactctagttgtccggtgtttgatttgtaaaactgtttctggtacaggacaaactgggggcaagagacaggacaaaaactcatatttttg 42870053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 324
Target Start/End: Original strand, 50178393 - 50178496
Alignment:
Q  222 ggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatt 320  Q
    ||||||||||  ||||||  |||||| | |||||||||| |||||||||||||  | |||  ||||||||| | ||||||||| | |||||||||| |||    
T  50178393 ggacaggacagaacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaaaactgatatt 50178492  T
Q  321 tttg 324  Q
    ||||    
T  50178493 tttg 50178496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 331
Target Start/End: Complemental strand, 4325984 - 4325866
Alignment:
Q  214 aaaataagggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaa 312  Q
    ||||||| | ||| ||||| |||||| ||||||| | |||||||||| |||||||||||||  | |||| ||||||||| | |||| |||| |  |||||    
T  4325984 aaaataaagtacaagacaaaacaactctagttgttcagtgtttgatttgtaaaactgtttcaggtacatgacaaactggaggcaagggacaggagaaaaa 4325885  T
Q  313 ctgaaatttttgcctctca 331  Q
    || | ||||||| ||||||    
T  4325884 ctcatatttttgtctctca 4325866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 23522065 - 23522013
Alignment:
Q  222 ggacaggacaagacaactgtagttgtactgtgtttga-ttgtaaaactgtttc 273  Q
    ||||||||||| |||||| ||||||| | |||||||| |||||||||||||||    
T  23522065 ggacaggacaaaacaactctagttgtccagtgtttgatttgtaaaactgtttc 23522013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 324
Target Start/End: Original strand, 3867524 - 3867654
Alignment:
Q  195 ggtgtgtttgatctattagaaaataagggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactgggg 293  Q
    |||| ||||||| | ||| ||||| | ||||| ||||  ||||||  |||||| | |||||||||| |||||||||||||  ||||| |||| ||||| |    
T  3867524 ggtgcgtttgatttgttaaaaaatgaaggacaagacagaacaactccagttgtccggtgtttgatttgtaaaactgtttcagggacagaacatactggag 3867623  T
Q  294 acaagagacatgccaaaaactgaaatttttg 324  Q
    |||||||||||| ||||| ||||||||||||    
T  3867624 acaagagacatgacaaaacctgaaatttttg 3867654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 324
Target Start/End: Complemental strand, 19906945 - 19906842
Alignment:
Q  222 ggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatt 320  Q
    |||||||| || ||||||  |||||| | |||||||||| |||||| ||||||  ||||| |||||||||| | |||| |||| | ||||||||||||||    
T  19906945 ggacaggataaaacaacttcagttgtccagtgtttgatttgtaaaattgtttcagggacagaacaaactggaggcaagggacaggacaaaaactgaaatt 19906846  T
Q  321 tttg 324  Q
    ||||    
T  19906845 tttg 19906842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 24571490 - 24571361
Alignment:
Q  196 gtgtgtttgatctattagaaaataagggacaggacaagacaactgtagttgtactgtgtttga-ttgtaaaactgtttcccggacataacaaactgggga 294  Q
    ||||||||||| |  || ||||| | ||||||||||| |||||| ||||||| | |||||||| |||||||||||||||  | |||  ||||||||| |     
T  24571490 gtgtgtttgatttgctaaaaaatgaaggacaggacaaaacaactctagttgtccagtgtttgatttgtaaaactgtttcaggtacaagacaaactggagg 24571391  T
Q  295 caagagacatgccaaaaactgaaatttttg 324  Q
    |||| |||| | |||||||| | |||||||    
T  24571390 caagggacaggacaaaaactcatatttttg 24571361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 324
Target Start/End: Complemental strand, 29585066 - 29584955
Alignment:
Q  214 aaaataagggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaa 312  Q
    ||||||| ||||||||||  |||||| ||||||| | |||||||||| |||||||||||||  | |||  ||||||||| | |||| |||| | ||||||    
T  29585066 aaaataaaggacaggacagaacaactctagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagtgacaggacaaaaa 29584967  T
Q  313 ctgaaatttttg 324  Q
    || | |||||||    
T  29584966 ctcatatttttg 29584955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 324
Target Start/End: Complemental strand, 40094686 - 40094583
Alignment:
Q  222 ggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatt 320  Q
    ||||||||||  |||||| ||||||| | |||||||||| |||||||||||||  | ||| |||||||||| | |||| |||| | |||||||| | |||    
T  40094686 ggacaggacagaacaactctagttgtccagtgtttgatttgtaaaactgtttcaggtacagaacaaactggaggcaagggacaggacaaaaactcatatt 40094587  T
Q  321 tttg 324  Q
    ||||    
T  40094586 tttg 40094583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 316
Target Start/End: Original strand, 41682955 - 41683050
Alignment:
Q  222 ggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactga 316  Q
    ||||||||||| ||||||  |||||| | |||||||||| |||||||||||||  | |||  ||||||||| | ||||||||| | ||||||||||    
T  41682955 ggacaggacaaaacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaagacaaaaactga 41683050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 314
Target Start/End: Original strand, 3695209 - 3695302
Alignment:
Q  222 ggacaggacaagacaactgtagttgtactgtgtttga-ttgtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaact 314  Q
    ||||||||||| |||||| ||||||| | |||||||| ||||||||||||||   | |||| ||||||||| | |||| |||| | ||||||||    
T  3695209 ggacaggacaaaacaactctagttgtccagtgtttgatttgtaaaactgttttaggtacatgacaaactggaggcaagggacaggacaaaaact 3695302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 331
Target Start/End: Original strand, 33364718 - 33364790
Alignment:
Q  259 ttgtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatttttgcctctca 331  Q
    |||||||||||||||  | |||  ||||||||| | ||||||||| | |||||||||| ||||||||| ||||    
T  33364718 ttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaaaactgatatttttgcccctca 33364790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 324
Target Start/End: Complemental strand, 44748889 - 44748778
Alignment:
Q  214 aaaataagggacaggacaagacaactgtagttgtactgtgtttga-ttgtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaa 312  Q
    ||||||| ||||||||||| |||||| ||||||| | |||||||| |||||||||||||||  | |||| ||||||| | | |||| ||||   ||||||    
T  44748889 aaaataaaggacaggacaaaacaactctagttgtccagtgtttgatttgtaaaactgtttcaggtacatgacaaactagaggcaagggacagaacaaaaa 44748790  T
Q  313 ctgaaatttttg 324  Q
    || |||||||||    
T  44748789 ctcaaatttttg 44748778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 48445669 - 48445604
Alignment:
Q  259 ttgtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatttttg 324  Q
    ||||||||||||||   ||||| |||||||||| | |||| |||||| ||||||||||||||||||    
T  48445669 ttgtaaaactgtttgagggacagaacaaactggaggcaagggacatgacaaaaactgaaatttttg 48445604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 329636 - 329553
Alignment:
Q  242 agttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatttttg 324  Q
    |||||| | |||||||||| |||||||||||||  ||||| |||||||||| | |||  |||| | ||||||||||||||||||    
T  329636 agttgtcccgtgtttgatttgtaaaactgtttcagggacagaacaaactggaggcaaaggacaagacaaaaactgaaatttttg 329553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 324
Target Start/End: Complemental strand, 21785045 - 21784954
Alignment:
Q  234 acaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatttttg 324  Q
    |||||| ||||||| | |||||||||| |||||||||||||  | |||| ||||||||| | ||||||||| | |||||||| | |||||||    
T  21785045 acaactctagttgttcagtgtttgatttgtaaaactgtttcaggcacatgacaaactggaggcaagagacaggacaaaaactcatatttttg 21784954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 324
Target Start/End: Complemental strand, 47953375 - 47953273
Alignment:
Q  223 gacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaattt 321  Q
    |||||||||  |||||| ||||||| | |||||||||| |||||||||||||  | |||  ||||||||| | |||| |||||| |||||||| | ||||    
T  47953375 gacaggacagaacaactctagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagggacatgacaaaaactcatattt 47953276  T
Q  322 ttg 324  Q
    |||    
T  47953275 ttg 47953273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 324
Target Start/End: Original strand, 13574 - 13704
Alignment:
Q  195 ggtgtgtttgatctattagaaaataagggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactgggg 293  Q
    |||| ||||||| | ||| ||||| | ||||||||||  ||||||  |||||| | |||||||||| |||||| ||||||  ||||| |||||||||| |    
T  13574 ggtgcgtttgatttgttaaaaaatgaaggacaggacagaacaactccagttgtccagtgtttgatttgtaaaattgtttcagggacagaacaaactggag 13673  T
Q  294 acaagagacatgccaaaaactgaaatttttg 324  Q
     |||| || | | ||||||||||||||||||    
T  13674 gcaagggataggacaaaaactgaaatttttg 13704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 324
Target Start/End: Complemental strand, 6896349 - 6896247
Alignment:
Q  223 gacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaattt 321  Q
    |||||||||  ||||||  |||||| | |||||||||| |||||||||||||  ||||| |||||||||| | |||| |||| |  ||||||||||||||    
T  6896349 gacaggacagaacaacttcagttgtccagtgtttgatttgtaaaactgtttcagggacaaaacaaactggaggcaagggacaggataaaaactgaaattt 6896250  T
Q  322 ttg 324  Q
    |||    
T  6896249 ttg 6896247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 35170149 - 35170224
Alignment:
Q  250 tgtgtttgattgtaaaactgtttcccggacataacaaact-ggggacaagagacatgccaaaaactgaaatttttg 324  Q
    |||||||||||||||||||||| |  ||||| ||||||||  ||| ||||||||| | |||||| |||||||||||    
T  35170149 tgtgtttgattgtaaaactgttccagggacaaaacaaactatggggcaagagacacgacaaaaattgaaatttttg 35170224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 324
Target Start/End: Original strand, 9732811 - 9732941
Alignment:
Q  195 ggtgtgtttgatctattagaaaataagggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactgggg 293  Q
    |||| ||||||| | ||| ||||| | ||||||||||  |||||| ||||||| | |||||||||| |||||||||||||  | |||  ||||||||| |    
T  9732811 ggtgcgtttgatttgttaaaaaatgaaggacaggacagaacaactctagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggag 9732910  T
Q  294 acaagagacatgccaaaaactgaaatttttg 324  Q
     |||| |||| | |||||||| | |||||||    
T  9732911 gcaagggacaagacaaaaactcatatttttg 9732941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 13249297 - 13249354
Alignment:
Q  214 aaaataagggacaggacaagacaactgtagttgtactgtgtttgattgtaaaactgtt 271  Q
    |||||||  |||| || |||||||||  | ||||||||||||||||||||||||||||    
T  13249297 aaaataaatgacatgataagacaactccaattgtactgtgtttgattgtaaaactgtt 13249354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 83476 - 83384
Alignment:
Q  198 gtgtttgatctattagaaaataagggacaggacaagacaactgtagttgtactgtgtttga-ttgtaaaactgtttcccggacataacaaact 289  Q
    ||||||||||| ||| ||||  | ||||| ||||||||||||  ||||| || |||||||| ||||||||||||||   |||||| |||||||    
T  83476 gtgtttgatctgttaaaaaacgaaggacatgacaagacaacttcagttgcacagtgtttgatttgtaaaactgtttgtgggacatgacaaact 83384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 39918689 - 39918637
Alignment:
Q  222 ggacaggacaagacaactgtagttgtactgtgtttga-ttgtaaaactgtttc 273  Q
    |||||||||||||||||| ||||||| | |||||||| |||||||||||||||    
T  39918689 ggacaggacaagacaactctagttgtccagtgtttgatttgtaaaactgtttc 39918637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 324
Target Start/End: Complemental strand, 11963523 - 11963420
Alignment:
Q  222 ggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatt 320  Q
    ||||||||||  |||||| ||||||| | |||||||||| |||||||||||||  | |||  ||||||||| | |||| |||||| |||||||| | |||    
T  11963523 ggacaggacagaacaactctagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagggacatgacaaaaactcatatt 11963424  T
Q  321 tttg 324  Q
    ||||    
T  11963423 tttg 11963420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 324
Target Start/End: Complemental strand, 32528897 - 32528794
Alignment:
Q  222 ggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatt 320  Q
    ||||| |||| ||||||| ||||||| | |||||||||| |||||||||||||  | |||  ||||||||| |||||| |||| | |||||||| | |||    
T  32528897 ggacatgacaggacaactctagttgttcagtgtttgatttgtaaaactgtttcaggtacaggacaaactggagacaagggacaggacaaaaactcatatt 32528798  T
Q  321 tttg 324  Q
    ||||    
T  32528797 tttg 32528794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 18470371 - 18470445
Alignment:
Q  251 gtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatttttg 324  Q
    |||||||||| |||||||||||||  ||||| |||||||||  | |||| |||| | ||||||||||||||||||    
T  18470371 gtgtttgatttgtaaaactgtttcagggacagaacaaactgaaggcaagggacaagacaaaaactgaaatttttg 18470445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 37148541 - 37148606
Alignment:
Q  259 ttgtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatttttg 324  Q
    |||||||||||||||  ||||| |||||||||| | |||| |||  | ||||||||||||||||||    
T  37148541 ttgtaaaactgtttcagggacagaacaaactggaggcaagggacgggacaaaaactgaaatttttg 37148606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 324
Target Start/End: Complemental strand, 3259865 - 3259762
Alignment:
Q  222 ggacaggacaagacaactgtagttgtactgtgtttgatt-gtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatt 320  Q
    ||||| ||||| |||||| ||||||| | |||||||||| |||||||||||||  | |||  ||||||||| | ||||||||| | |||||||| | |||    
T  3259865 ggacatgacaaaacaactctagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaaaactcatatt 3259766  T
Q  321 tttg 324  Q
    ||||    
T  3259765 tttg 3259762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 331
Target Start/End: Complemental strand, 34176974 - 34176902
Alignment:
Q  259 ttgtaaaactgtttcccggacataacaaactggggacaagagacatgccaaaaactgaaatttttgcctctca 331  Q
    |||||||||||||||  | |||| ||||||||| | |||| |||||| |||||||| | ||||||| ||||||    
T  34176974 ttgtaaaactgtttcaggtacatgacaaactggaggcaagtgacatgacaaaaactcatatttttgtctctca 34176902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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