View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_high_52 (Length: 332)
Name: NF1370_high_52
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 146 - 299
Target Start/End: Original strand, 41546615 - 41546768
Alignment:
| Q |
146 |
ttgcagttaatgctgatgaatgcttaatgacaagaatgcaagagatgtcattggactatcatttccttgtggaacaggaagttggttccataacacatgc |
245 |
Q |
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| T |
41546615 |
ttgcagttaatgctgatgaatgcttaatgacaagaatgcaagagatgtcattggactatcatttccttgtggaacaggaagttggttccataactcatgc |
41546714 |
T |
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| Q |
246 |
tttctttggtttcaatggtaaatatcattaaattccctattacagctttgaata |
299 |
Q |
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| T |
41546715 |
tttctttggtttcaatggtaaatatcattaaattcccttatacagcttggaata |
41546768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 41546453 - 41546532
Alignment:
| Q |
30 |
catgaaactcttaattatta---attgagattaatgttttatgcattggctgtgtaacatttttacacataaactcaatca |
107 |
Q |
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| T |
41546453 |
catgaaactcctaattattagtaattgagattaat-tgttatgcattgactgtgtaacatttttacacataaactcaatca |
41546532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 26831746 - 26831705
Alignment:
| Q |
154 |
aatgctgatgaatgcttaatgacaagaatgcaagagatgtca |
195 |
Q |
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| T |
26831746 |
aatgcggatgaatgtttaatgacaaggatgcaagagatgtca |
26831705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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