View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_high_60 (Length: 282)
Name: NF1370_high_60
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_high_60 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 43616643 - 43616726
Alignment:
| Q |
61 |
ataaactcactcaaataccctcattttccattactcatctatcatcacattacctacactttcctcatcaatttttcatataaa |
144 |
Q |
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| T |
43616643 |
ataaactcactcaaataccctcattttccatcactcatctatcatcacattacctacactttcctcatcaatttttcatataaa |
43616726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 38239 - 38160
Alignment:
| Q |
60 |
cataaactcactcaaataccctcattttccattactcatctatcatcacattacctacactttcctcatcaatttttcat |
139 |
Q |
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||||||||| ||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38239 |
cataaactctctcaaataccctcatgtttcattactcatctatcatcacattacttacactttcctcatcaatttttcat |
38160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 16149 - 16204
Alignment:
| Q |
84 |
ttttccattactcatctatcatcacattacctacactttcctcatcaatttttcat |
139 |
Q |
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||||| || |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16149 |
ttttcaatcactcatctatcatcacattacctacacttttctcatcaatttttcat |
16204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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