View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_high_67 (Length: 254)
Name: NF1370_high_67
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_high_67 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 30 - 245
Target Start/End: Original strand, 18621046 - 18621261
Alignment:
| Q |
30 |
aaggtgtggtcgaggaagttgatgaggacaaggagaaagatgccaagaagaaaaagaagattaaggaggtttctcatgagtgggaactcatcaacaagca |
129 |
Q |
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| T |
18621046 |
aaggtgtggtcgaggaagttgatgaggacaaggagaaagatgccaagaagaaaaagaagattaaggaggtttctcatgagtgggaactcatcaacaagca |
18621145 |
T |
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| Q |
130 |
gaagccaatctggctgcgcaagccagaagagatcaccaaggatgaatatgctgctttctacaagagcctaaccaatgactgggaagaacacttggctgtg |
229 |
Q |
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| T |
18621146 |
gaagccaatctggctgcgcaagccagaagagatcaccaaggatgaatatgctgctttctacaagagcctaaccaatgactgggaagaacacttggctgtg |
18621245 |
T |
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| Q |
230 |
aagcatttctctgtgg |
245 |
Q |
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| T |
18621246 |
aagcatttctctgtgg |
18621261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 59 - 245
Target Start/End: Complemental strand, 45061792 - 45061606
Alignment:
| Q |
59 |
aaggagaaagatgccaagaagaaaaagaagattaaggaggtttctcatgagtgggaactcatcaacaagcagaagccaatctggctgcgcaagccagaag |
158 |
Q |
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| T |
45061792 |
aaggagaaagattcaaagaagaaaaagaagattaaggaggtttctcatgagtggcaacaaatcaacaaacagaaaccaatttggttgcgtaagccagaag |
45061693 |
T |
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| Q |
159 |
agatcaccaaggatgaatatgctgctttctacaagagcctaaccaatgactgggaagaacacttggctgtgaagcatttctctgtgg |
245 |
Q |
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| T |
45061692 |
agattacaaaggatgagtatgcttcattctacaagagcattactaatgattgggaagaacacttggctgttaagcacttttctgtgg |
45061606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 42166112 - 42166021
Alignment:
| Q |
149 |
aagccagaagagatcaccaaggatgaatatgctgctttctacaagagcctaaccaatgactgggaagaacacttggctgtgaagcatttctc |
240 |
Q |
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||||| || ||||| || |||||||| ||||||||||| |||||||| || |||||||| |||||||| || |||||||| ||||| ||||| |
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| T |
42166112 |
aagcccgaggagattacaaaggatgagtatgctgctttttacaagagtctcaccaatgattgggaagagcatttggctgttaagcacttctc |
42166021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 42176753 - 42176662
Alignment:
| Q |
149 |
aagccagaagagatcaccaaggatgaatatgctgctttctacaagagcctaaccaatgactgggaagaacacttggctgtgaagcatttctc |
240 |
Q |
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| T |
42176753 |
aagcccgaggagattacaaaggatgagtatgctgctttttacaagagtctcaccaatgattgggaagagcatttggctgttaagcacttctc |
42176662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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