View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1370_high_7 (Length: 580)

Name: NF1370_high_7
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1370_high_7
NF1370_high_7
[»] chr5 (9 HSPs)
chr5 (157-471)||(11335599-11335917)
chr5 (1-79)||(11335152-11335230)
chr5 (475-570)||(11335995-11336090)
chr5 (13-79)||(11335202-11335269)
chr5 (180-273)||(24136585-24136679)
chr5 (10-79)||(11335120-11335192)
chr5 (12-45)||(11335312-11335345)
chr5 (27-79)||(11335289-11335341)
chr5 (24-71)||(9511903-9511953)
[»] chr6 (7 HSPs)
chr6 (204-257)||(21861811-21861864)
chr6 (22-73)||(22860895-22860946)
chr6 (180-255)||(9402981-9403056)
chr6 (24-73)||(18981357-18981407)
chr6 (13-47)||(22860737-22860771)
chr6 (12-61)||(22860868-22860918)
chr6 (204-257)||(13167196-13167249)
[»] chr2 (7 HSPs)
chr2 (12-61)||(29409358-29409407)
chr2 (13-61)||(38583917-38583965)
chr2 (222-269)||(32290392-32290441)
chr2 (12-61)||(8986315-8986364)
chr2 (22-72)||(8986342-8986394)
chr2 (12-61)||(8986463-8986512)
chr2 (12-49)||(38584023-38584060)
[»] chr4 (6 HSPs)
chr4 (219-257)||(16870260-16870298)
chr4 (26-74)||(16871166-16871216)
chr4 (13-47)||(16871155-16871189)
chr4 (12-61)||(16870846-16870895)
chr4 (22-72)||(16870873-16870925)
chr4 (12-61)||(16870994-16871043)
[»] chr7 (4 HSPs)
chr7 (12-49)||(26403160-26403197)
chr7 (22-72)||(46963711-46963763)
chr7 (12-61)||(46963741-46963790)
chr7 (12-56)||(46963590-46963634)
[»] chr3 (5 HSPs)
chr3 (193-257)||(50295310-50295374)
chr3 (16-61)||(42530833-42530879)
chr3 (12-46)||(50295873-50295907)
chr3 (24-56)||(42530805-42530837)
chr3 (30-73)||(50295884-50295928)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 157 - 471
Target Start/End: Original strand, 11335599 - 11335917
Alignment:
Q  157 tgaagcaccaaaacgaaccga-ctaaacaaaccaaagcaagttgaacaaaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaaca 255  Q
    |||| |||||||||||||| | |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11335599 tgaaacaccaaaacgaaccaaactaaacaaaccaaaacaagttgaaccaaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaata 11335698  T
Q  256 cataaacacacgaagactnnnnnnnctcacaaacggattactagactcaagtaaataaaccnnnnnnnggagatcagcccaaacataaaactcaagcaaa 355  Q
    || |||||||||||||||       |||||||||||||||||||||||| |||||||||||       ||||||| ||||||||||||||||||||||||    
T  11335699 cagaaacacacgaagactaaaaaaactcacaaacggattactagactcacgtaaataaaccaaaaaaaggagatcggcccaaacataaaactcaagcaaa 11335798  T
Q  356 aagaaccaccaaccttgattaaattaaaagaataatgaa---aaggagaataatcggatgcaaatctgactccaaaatccacaaacaaaatatgattcct 452  Q
    |||||||||||||||||||||||||||||||| ||||||   ||| ||||||||||| ||||| ||||||||||||| ||||||||||||| | ||||||    
T  11335799 aagaaccaccaaccttgattaaattaaaagaacaatgaaaagaagaagaataatcggctgcaagtctgactccaaaacccacaaacaaaatctaattcct 11335898  T
Q  453 ctatatattcccaattatg 471  Q
    | |||||||||||||||||    
T  11335899 ccatatattcccaattatg 11335917  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 11335152 - 11335230
Alignment:
Q  1 tcatcaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaaagcaatcaatcaggagaa 79  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11335152 tcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaaagcaatcaatcaggagaa 11335230  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 475 - 570
Target Start/End: Original strand, 11335995 - 11336090
Alignment:
Q  475 aatccaaatgtagccataaaagcaaacaacnnnnnnnggcaatttcaaatccaccaacatcagtgtttcaacaaagagtcaatcggagtcaaataa 570  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  11335995 aatccaaatgtagccataaaagcaaacaacacaaaaaggcaatttcaaatccaccaacaacattgtttcaacaaagagtcaatcggagtcaaataa 11336090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 11335202 - 11335269
Alignment:
Q  13 gagaagtgcaatgcaatcaatcagaagaatcaa-aaggtgagaagtgcaaagcaatcaatcaggagaa 79  Q
    ||||||||||| |||||||||||| |||||||| |||  ||||||||||||||||||||| |||||||    
T  11335202 gagaagtgcaaagcaatcaatcaggagaatcaataagaggagaagtgcaaagcaatcaataaggagaa 11335269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 273
Target Start/End: Complemental strand, 24136679 - 24136585
Alignment:
Q  180 aaacaaaccaaagcaagttgaacaaaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaacaca--taaacacacgaagact 273  Q
    |||| ||||||  |||| ||||| |||||||| | || |||||| |||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  24136679 aaacgaaccaagacaagctgaaccaaagcaacca-agacagacatagacaaacaaccaattaaccaaacacaaacacaatgaaacacacgaagact 24136585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 11335120 - 11335192
Alignment:
Q  10 gaggagaagtgcaatgcaatcaatcagaagaatcaaaagg---tgagaagtgcaaagcaatcaatcaggagaa 79  Q
    |||||||||||||  |||||||||||||||||||| ||||    ||||||||||| |||||||||||| ||||    
T  11335120 gaggagaagtgcagggcaatcaatcagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaa 11335192  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 11335312 - 11335345
Alignment:
Q  12 ggagaagtgcaatgcaatcaatcagaagaatcaa 45  Q
    ||||||||||||||||||||||||||||||||||    
T  11335312 ggagaagtgcaatgcaatcaatcagaagaatcaa 11335345  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 11335289 - 11335341
Alignment:
Q  27 aatcaatcagaagaatcaaaaggtgagaagtgcaaagcaatcaatcaggagaa 79  Q
    ||||||||| |||||| |||||| ||||||||||| |||||||||||| ||||    
T  11335289 aatcaatcaaaagaatgaaaaggggagaagtgcaatgcaatcaatcagaagaa 11335341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 9511953 - 9511903
Alignment:
Q  24 tgcaatcaatcagaagaatcaaaagg---tgagaagtgcaaagcaatcaat 71  Q
    ||||||||||||||||||||||||||   | |||||||||| |||||||||    
T  9511953 tgcaatcaatcagaagaatcaaaaggggatcagaagtgcaatgcaatcaat 9511903  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 21861864 - 21861811
Alignment:
Q  204 aaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaacaca 257  Q
    |||||||| |||| || ||| |||||||||||||||||||||||||||||||||    
T  21861864 aaagcaaccagagacatacatagacgaacaaccaattaaccaaacacaaacaca 21861811  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 22860946 - 22860895
Alignment:
Q  22 aatgcaatcaatcagaagaatcaaaaggtgagaagtgcaaagcaatcaatca 73  Q
    ||||||||||||| |||||| ||||||| ||||||||||| |||||||||||    
T  22860946 aatgcaatcaatcggaagaaccaaaaggggagaagtgcaatgcaatcaatca 22860895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 9403056 - 9402981
Alignment:
Q  180 aaacaaaccaaagcaagttgaacaaaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaaca 255  Q
    |||| ||||||  |||||||||| ||||||||  ||  || ||| ||| |||||||||||||||||||||||||||    
T  9403056 aaacgaaccaagacaagttgaaccaaagcaacccgaaacaaacaaagaggaacaaccaattaaccaaacacaaaca 9402981  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 18981407 - 18981357
Alignment:
Q  24 tgcaatcaatcagaagaatcaaaaggtg-agaagtgcaaagcaatcaatca 73  Q
    |||||||||||||||||||||||||| | | |||||||| |||||||||||    
T  18981407 tgcaatcaatcagaagaatcaaaaggagaaaaagtgcaatgcaatcaatca 18981357  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 22860771 - 22860737
Alignment:
Q  13 gagaagtgcaatgcaatcaatcagaagaatcaaaa 47  Q
    |||||||||||||||||||| ||||||||||||||    
T  22860771 gagaagtgcaatgcaatcaaacagaagaatcaaaa 22860737  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 22860918 - 22860868
Alignment:
Q  12 ggagaagtgcaatgcaatcaatcagaagaatcaa-aaggtgagaagtgcaa 61  Q
    |||||||||||||||||||||||| ||||||||| | || |||||||||||    
T  22860918 ggagaagtgcaatgcaatcaatcaaaagaatcaatagggggagaagtgcaa 22860868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 13167249 - 13167196
Alignment:
Q  204 aaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaacaca 257  Q
    |||||||| |||| || ||| | ||||||||||||||||||||| |||||||||    
T  13167249 aaagcaaccagagacaaacataaacgaacaaccaattaaccaaatacaaacaca 13167196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 29409358 - 29409407
Alignment:
Q  12 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 61  Q
    |||||||||||||||||||||||||||||||||| ||| |||| ||||||    
T  29409358 ggagaagtgcaatgcaatcaatcagaagaatcaacaggggagacgtgcaa 29409407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 38583917 - 38583965
Alignment:
Q  13 gagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 61  Q
    |||||||||||| ||||||||||||||||||||| || |||||||||||    
T  38583917 gagaagtgcaatacaatcaatcagaagaatcaaagggggagaagtgcaa 38583965  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 32290441 - 32290392
Alignment:
Q  222 cagagacgaacaaccaattaaccaaacacaaacac--ataaacacacgaa 269  Q
    ||||||||||||||||||||| ||| |||||||||  |||||||||||||    
T  32290441 cagagacgaacaaccaattaatcaagcacaaacacaaataaacacacgaa 32290392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 8986364 - 8986315
Alignment:
Q  12 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 61  Q
    |||||||| |||||||||||||| |||||| ||| ||| |||||||||||    
T  8986364 ggagaagtacaatgcaatcaatcggaagaaccaataggggagaagtgcaa 8986315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 8986394 - 8986342
Alignment:
Q  22 aatgcaatcaatcagaagaatcaaaag--gtgagaagtgcaaagcaatcaatc 72  Q
    |||||||||||||||||||||||||||  | ||||||| ||| ||||||||||    
T  8986394 aatgcaatcaatcagaagaatcaaaagatgggagaagtacaatgcaatcaatc 8986342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 8986512 - 8986463
Alignment:
Q  12 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 61  Q
    ||||||||||||||||||||||| |||||| ||| |||  ||||||||||    
T  8986512 ggagaagtgcaatgcaatcaatcggaagaaccaatagggtagaagtgcaa 8986463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 38584023 - 38584060
Alignment:
Q  12 ggagaagtgcaatgcaatcaatcagaagaatcaaaagg 49  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  38584023 ggagaagtgcaatgcaatcactcagaaaaatcaaaagg 38584060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 16870298 - 16870260
Alignment:
Q  219 agacagagacgaacaaccaattaaccaaacacaaacaca 257  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  16870298 agacatagacgaacaaccaattaaccaaacacaaacaca 16870260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 16871216 - 16871166
Alignment:
Q  26 caatcaatcagaagaatcaaaa--ggtgagaagtgcaaagcaatcaatcag 74  Q
    ||||||||||||||||||||||  || ||||||||||| ||||||||||||    
T  16871216 caatcaatcagaagaatcaaaaggggagagaagtgcaatgcaatcaatcag 16871166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 16871189 - 16871155
Alignment:
Q  13 gagaagtgcaatgcaatcaatcagaagaatcaaaa 47  Q
    ||||||||||||||||||||||||| |||||||||    
T  16871189 gagaagtgcaatgcaatcaatcagacgaatcaaaa 16871155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 16870895 - 16870846
Alignment:
Q  12 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 61  Q
    |||||||| |||||||||||||| |||||| ||| ||| |||||||||||    
T  16870895 ggagaagtacaatgcaatcaatcggaagaaccaacaggggagaagtgcaa 16870846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 16870925 - 16870873
Alignment:
Q  22 aatgcaatcaatcagaagaatcaaaag--gtgagaagtgcaaagcaatcaatc 72  Q
    |||||||||||||||||||||||||||  | ||||||| ||| ||||||||||    
T  16870925 aatgcaatcaatcagaagaatcaaaagatgggagaagtacaatgcaatcaatc 16870873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 16871043 - 16870994
Alignment:
Q  12 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 61  Q
    ||||||||||||||||||||||| |||||| ||| ||| || ||||||||    
T  16871043 ggagaagtgcaatgcaatcaatcggaagaaccaataggggaaaagtgcaa 16870994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 26403197 - 26403160
Alignment:
Q  12 ggagaagtgcaatgcaatcaatcagaagaatcaaaagg 49  Q
    |||||||||||||||||||||||| |||||||||||||    
T  26403197 ggagaagtgcaatgcaatcaatcaaaagaatcaaaagg 26403160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 46963711 - 46963763
Alignment:
Q  22 aatgcaatcaatcagaagaatcaaaag--gtgagaagtgcaaagcaatcaatc 72  Q
    |||||||||||||||||||||||||||  | ||||||| ||| ||||||||||    
T  46963711 aatgcaatcaatcagaagaatcaaaagatgggagaagtacaatgcaatcaatc 46963763  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 46963741 - 46963790
Alignment:
Q  12 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 61  Q
    |||||||| |||||||||||||| |||||| ||| ||| |||||||||||    
T  46963741 ggagaagtacaatgcaatcaatcggaagaaccaataggggagaagtgcaa 46963790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 46963590 - 46963634
Alignment:
Q  12 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaag 56  Q
    ||||||||||||||||||||||| |||||| ||| ||| ||||||    
T  46963590 ggagaagtgcaatgcaatcaatcggaagaaccaataggggagaag 46963634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 50295374 - 50295310
Alignment:
Q  193 caagttgaacaaaagcaactagagtcagacagagacgaacaaccaattaaccaaacacaaacaca 257  Q
    |||| ||||| |||||||| | || |||||| |||| ||||||||||||| ||||||||||||||    
T  50295374 caagctgaaccaaagcaaccatagacagacatagacaaacaaccaattaatcaaacacaaacaca 50295310  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 42530879 - 42530833
Alignment:
Q  16 aagtgcaatgcaatcaatcagaagaatcaaaaggtg-agaagtgcaa 61  Q
    ||||| |||||||||||||||||||||||||||| | ||||||||||    
T  42530879 aagtgaaatgcaatcaatcagaagaatcaaaaggggaagaagtgcaa 42530833  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 50295907 - 50295873
Alignment:
Q  12 ggagaagtgcaatgcaatcaatcagaagaatcaaa 46  Q
    |||||||||||||||||||||||| ||||||||||    
T  50295907 ggagaagtgcaatgcaatcaatcaaaagaatcaaa 50295873  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 42530837 - 42530805
Alignment:
Q  24 tgcaatcaatcagaagaatcaaaaggtgagaag 56  Q
    |||||||||||||||||||||||||| ||||||    
T  42530837 tgcaatcaatcagaagaatcaaaaggggagaag 42530805  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 50295928 - 50295884
Alignment:
Q  30 caatcagaagaatcaaaag-gtgagaagtgcaaagcaatcaatca 73  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||    
T  50295928 caatcagaagaatcaaaagagggagaagtgcaatgcaatcaatca 50295884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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