View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1370_high_72 (Length: 251)
Name: NF1370_high_72
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_high_72 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 39272368 - 39272547
Alignment:
| Q |
1 |
aagaaaggaataatcaaataccatgaaaactaaaaattattcaaaacacgagagtaaaatattgatgcattatttaggtgaaatacattctctgagagga |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39272368 |
aagaaaggaataatcaaatacaatcaaaactaaaaattattcaaaacaagagagtaaaatattgatgcattatttaggtgaaatacattctctgagagga |
39272467 |
T |
|
| Q |
101 |
atactactacatatgtttgaaattactaattactgtatattttgcatctgtataaataataacctccatttgaaggccctta |
182 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39272468 |
atactactaaataagtttgaaatta--aattactgtatattttgcatctgtataaataataacctccatttgaaggccctta |
39272547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 39272575 - 39272637
Alignment:
| Q |
181 |
tagaggatctcattcaggcaagccccaaagacttgagtctagagaattcaatcctcctatgct |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39272575 |
tagaggatctcattcaggcaagccccaaagacttgagtctagagaattcaatcctcctatgct |
39272637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University