View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_10 (Length: 561)
Name: NF1370_low_10
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 29 - 460
Target Start/End: Complemental strand, 37225782 - 37225351
Alignment:
| Q |
29 |
aaaccatccatgatataggcaaggcttgtgaggagtggggtttcttcatactaaccaatcactctgtatcaaagagtctcatggagaaaatggttgacca |
128 |
Q |
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| T |
37225782 |
aaaccatccatgatataggcaaggcttgtgaggagtggggattcttcatactaaccaatcactctgtatcaaagagtctcatggagaaaatggttgacca |
37225683 |
T |
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| Q |
129 |
agtttttgctttctttaatcttaaagaagaagataaacaagtgtatgcagataaggaagtaaaggatgattcaataaagtatggtacaagcttcaatgtt |
228 |
Q |
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| T |
37225682 |
agtttttgctttctttaaccttaaagaagaagataagcaagtgtatgcagataaggaagtaacggatgattcaataaagtatggtacaagcttcaatgtt |
37225583 |
T |
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| Q |
229 |
tcaggggataaaaacttgttctggagggatttcattaaaattattgttcatcctgaatttcactcaccggataagccttctggcttcaggtttttgctta |
328 |
Q |
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| T |
37225582 |
tcaggggataaaaacttgttctggagggatttcattaaaattattgttcatcctaaatttcactcaccggataaaccttctggcttcaggtttttgctta |
37225483 |
T |
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| Q |
329 |
ttctctcttttgctttttccttgcaactctaaatccaccatatgctcagtctaaatcaccacatgttgtagattcttaggttgctttgctcataagtttt |
428 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37225482 |
ttctctcttttactttttccttgcaactctaaatccaccatatgctcagtctaaatcaccacatgttgtagattcttaggttgctttgctcataagtttt |
37225383 |
T |
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| Q |
429 |
aagttctaaattgtttgtggttatagacttat |
460 |
Q |
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| T |
37225382 |
aagttctaaattgtttgtggttatagacttat |
37225351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 458 - 547
Target Start/End: Complemental strand, 37224817 - 37224728
Alignment:
| Q |
458 |
tatgttaacttaagtactactccatccgtctcattataagtatctgatttgagttgtgcacggttctttaagaatatgattagttgtgtt |
547 |
Q |
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| T |
37224817 |
tatgttaacttaagtactactccatccgtctcattataagtatctgatttgagttgtgcacggttctttaagaatatgattagttgtgtt |
37224728 |
T |
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