View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_15 (Length: 487)
Name: NF1370_low_15
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 51 - 245
Target Start/End: Original strand, 1327119 - 1327314
Alignment:
| Q |
51 |
cgttcaaacttcactgaatcaatatcatttttt-cataagcaaaagattcctagagggagtacaaggaaccctccaacccatgcnnnnnnnnnncttgga |
149 |
Q |
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| T |
1327119 |
cgttcaaacttcactgaatcaatatcatttttttcataagcaaaagattcttagagagagtacaaggaatcctccaacctatgcaaaaaaaaaacttgga |
1327218 |
T |
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| Q |
150 |
tgagtcactaaaaatgtcataatatatacacaaaatgtaaattgtaataatcgttaaatacaaagtcaaatttatttagaatctttggacgatact |
245 |
Q |
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| T |
1327219 |
tgagtcactaaaaatgtcataatatatacacaaaatgtaagttgtaataatcgttaaacacaaagtcaaatttatttagaatctttggacgatact |
1327314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 279 - 350
Target Start/End: Original strand, 1331049 - 1331120
Alignment:
| Q |
279 |
taaattatgaaactacaaaatattaaagtaaaacatatgagtttactcaaacactttcttaacaagtggggt |
350 |
Q |
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| T |
1331049 |
taaactatgaaactacaaaatattaaagtaaaacatgtgagtctactcaaacactttcttaataagtggggt |
1331120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 394
Target Start/End: Original strand, 1331120 - 1331152
Alignment:
| Q |
362 |
tgatgcaataaagaagcgagctttcggctgcta |
394 |
Q |
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| T |
1331120 |
tgatgcaataaagaagcgagctttcggccgcta |
1331152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 9e-68; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 259 - 477
Target Start/End: Complemental strand, 7469165 - 7468938
Alignment:
| Q |
259 |
gttacatattttatgtatgtta--aattatgaaactacaaaatattaaagtaaaacatatgagtttactcaaacactttcttaacaagtggggtcgatac |
356 |
Q |
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| T |
7469165 |
gttacatattttatgtatgttataaactatgaaactacaaaata---aagtaaaatatgtgagtctactcaaacgctttcttaacaagtggggtcggtac |
7469069 |
T |
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| Q |
357 |
tcacct----------gatgcaataaagaagcgagctttcggctgctatgtgtgcattcttgtcaacatcaacctatccaagagaatttttgaagaggtg |
446 |
Q |
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| T |
7469068 |
tcgcctcttgattgatgatgcaataaagaagcgagcttttggccgctatgtgtgcattctagtcaacatcaacctatccaagagaatttttgaagaggtg |
7468969 |
T |
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| Q |
447 |
gtggttgaacttgagggctttgcgttctgtg |
477 |
Q |
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| T |
7468968 |
gtggttgaacttgagggctttgcgttctgtg |
7468938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 7469775 - 7469694
Alignment:
| Q |
51 |
cgttcaaacttcactgaatcaatatcattttttcataagcaaaagattcctagagggagtacaaggaaccctccaacccatg |
132 |
Q |
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| T |
7469775 |
cgttcaaacttcactgaatcaatatcattttttcataagcaaaagattcttagagggagtacaaggaaccctccaacccatg |
7469694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 7469683 - 7469630
Alignment:
| Q |
194 |
taataatcgttaaatacaaagtcaaatttatttagaatctttggacgatactttg |
248 |
Q |
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| T |
7469683 |
taataatcgttaaacacaaagtcaaatttatttagaatc-ttggacgatactttg |
7469630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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