View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_18 (Length: 478)
Name: NF1370_low_18
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 30 - 468
Target Start/End: Complemental strand, 41447435 - 41446987
Alignment:
| Q |
30 |
actttgactctaggaataactattagaggaattactcaacttaacaaatcattataaaccactatgaagctctgacacaacctggacatgtcgacaccct |
129 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41447435 |
actttgactctaggaataactattagtggaattactcaacttaacaaatcattataaaccactatgaagctctgacacaacctggacatgtcgacaccct |
41447336 |
T |
|
| Q |
130 |
aatgtaaaaaacacaagaaatt----tttctg-------ttgattttaatcaaaataagatatatatctattacaaacatgttgatttttctgnnnnnnn |
218 |
Q |
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|||||||||||||||||| | || || | || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41447335 |
aatgtaaaaaacacaagacaacgacattgctacactacatatatattaatcaaaataagatatatatctattacaaacatgttgatttttctgtttttt- |
41447237 |
T |
|
| Q |
219 |
atttatctacacctcaagggatgcagcgacaacaagtaattttatgatattatatttttgttcaacaactgtgatttccttgattaatcggtcgaacact |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41447236 |
atttatctacacctcaagggatgcagcgacaacaagtgattttatgatattatatttttcttcaacaactgtgatttccttgattaatcggtcgaacact |
41447137 |
T |
|
| Q |
319 |
tccttcactgaagacagtatgttcttgttcaaggattttttccattgaacttgaaggaatggaatttgatgatacaatggaaggatcaatatgcaatact |
418 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41447136 |
tccttcactgaaaacagtatgttcttgttcaaggattttttccattgaacttgaaggaatagaatttgatgatacaatggaaggatcaatatgcaatact |
41447037 |
T |
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| Q |
419 |
gcagatttctccatgacattgtcccaggatgctatgttgcatgctctctg |
468 |
Q |
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| T |
41447036 |
gcagatttctccatgacattgtcccaggatgctatgttgcatgctctctg |
41446987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 30 - 468
Target Start/End: Complemental strand, 41457621 - 41457169
Alignment:
| Q |
30 |
actttgactctaggaataactattagaggaattactcaacttaacaaatcattataaaccactatgaag------ctctgacacaacctggacatgtcga |
123 |
Q |
| |
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||||||||||||||||||||| ||| | ||||||||||||||||||| |||| |||||| ||||||||| ||||||||||| | |||| ||||| |
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| T |
41457621 |
actttgactctaggaataactcttacatgaattactcaacttaacaagtcatgataaacaactatgaagcacgaactctgacacaa-cacgacacgtcga |
41457523 |
T |
|
| Q |
124 |
ca-ccctaatgtaaaaaacacaaga-aatttttctg-----ttgattttaatcaaaataagatatatatctattacaaacatgttgatttttctgnnnnn |
216 |
Q |
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|| |||||||||||||| ||||||| || | | | | |||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
41457522 |
cacccctaatgtaaaaagcacaagacaacgacaccgccacatataaattaatcaaaataag--atatatctattacacacatgttgatttttctgctt-- |
41457427 |
T |
|
| Q |
217 |
nnatttatctacacctcaagggatgcagcgacaacaagtaat----tttatgatattatatttttgttcaacaactgtgatttccttgattaatcggtcg |
312 |
Q |
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|||| |||||||||| ||||||||| ||||| | || ||||| ||||||||||||| |||||||||||||||||| |||||||| |||||| |
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| T |
41457426 |
---tttagttacacctcaaaggatgcagcaccaacagatgattttatttattatattatatttttcttcaacaactgtgatttctttgattaaccggtcg |
41457330 |
T |
|
| Q |
313 |
aacacttccttcactgaagacagtatgttcttgttcaaggattttttccattgaacttgaaggaatggaatttgatgatacaatggaaggatcaatatgc |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||||| |||||||||||||||| |
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| T |
41457329 |
aacacttccttcactgaagacagtatgttcttgttcaaggatgtttcccattgaacttgaaggaatagaattagatgatacaagggaaggatcaatatgc |
41457230 |
T |
|
| Q |
413 |
aatactgcagatttctccatg-----acattgtcccaggatgctatgttgcatgctctctg |
468 |
Q |
| |
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|| |||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| |
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| T |
41457229 |
aaaactgcagatttctccatgacattacattgtcccaagatgctatgttgcgtgctctctg |
41457169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 16419031 - 16419100
Alignment:
| Q |
30 |
actttgactctaggaataactattagaggaattactcaacttaacaaatcattataaaccactatgaagc |
99 |
Q |
| |
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||||||||||||||||||||| ||| | ||||||||||||||||||| ||||||||||| ||||| |||| |
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|
| T |
16419031 |
actttgactctaggaataactcttacatgaattactcaacttaacaagtcattataaacaactatcaagc |
16419100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 468
Target Start/End: Original strand, 37456113 - 37456220
Alignment:
| Q |
361 |
cattgaacttgaaggaatggaatttgatgatacaatggaaggatcaatatgcaatactgcagatttctccatgacattgtcccaggatgctatgttgcat |
460 |
Q |
| |
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|||||||||||| |||| |||| ||||||||| ||||||||| ||||| | ||| |||||| |||||||||||||||||||| |||||| | | |
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| T |
37456113 |
cattgaacttgatggaaaagaataggatgatacaggggaaggatcggtatgcgttcctgaagatttatccatgacattgtcccaggaccctatgtcgagt |
37456212 |
T |
|
| Q |
461 |
gctctctg |
468 |
Q |
| |
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|||||||| |
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| T |
37456213 |
gctctctg |
37456220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 18979609 - 18979651
Alignment:
| Q |
265 |
atattatatttttgttcaacaactgtgatttccttgattaatc |
307 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
18979609 |
atattatatttttcatcaacaagtgtgatttccttgattaatc |
18979651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 16238627 - 16238587
Alignment:
| Q |
417 |
ctgcagatttctccatgacattgtcccaggatgctatgttg |
457 |
Q |
| |
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||||| ||||||||||||||||||||||| | ||||||||| |
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| T |
16238627 |
ctgcatatttctccatgacattgtcccagaaggctatgttg |
16238587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 18988074 - 18988114
Alignment:
| Q |
267 |
attatatttttgttcaacaactgtgatttccttgattaatc |
307 |
Q |
| |
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||||||||||| ||||||| |||||||||||||||||||| |
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| T |
18988074 |
attatatttttcatcaacaagtgtgatttccttgattaatc |
18988114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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