View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1370_low_2 (Length: 746)

Name: NF1370_low_2
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1370_low_2
NF1370_low_2
[»] chr4 (12 HSPs)
chr4 (30-705)||(42767882-42768553)
chr4 (217-438)||(42715583-42715804)
chr4 (308-435)||(42736172-42736299)
chr4 (375-443)||(42742392-42742460)
chr4 (375-443)||(42751751-42751819)
chr4 (375-443)||(42761213-42761281)
chr4 (599-684)||(42715229-42715314)
chr4 (577-645)||(42742185-42742253)
chr4 (577-645)||(42751544-42751612)
chr4 (577-645)||(42761006-42761074)
chr4 (67-134)||(42742703-42742770)
chr4 (67-134)||(42752062-42752129)
[»] chr5 (4 HSPs)
chr5 (373-443)||(23041946-23042016)
chr5 (577-645)||(23042246-23042314)
chr5 (67-134)||(23041634-23041701)
chr5 (566-645)||(42315647-42315726)
[»] chr7 (4 HSPs)
chr7 (345-435)||(31049651-31049741)
chr7 (345-435)||(31162547-31162637)
chr7 (384-435)||(31203039-31203090)
chr7 (370-435)||(31107145-31107210)


Alignment Details
Target: chr4 (Bit Score: 639; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 30 - 705
Target Start/End: Complemental strand, 42768553 - 42767882
Alignment:
Q  30 tcaatttctaaagtggaaacaaaattagggcaaagtccatctccaattatggcttcattttcatcaagaggacctaatatcattgacccatcaatcctca 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42768553 tcaatttctaaagtggaaacaaaattagggcaaagtccatctccaattatggcttcattttcatcaagaggacctaatatcattgacccatcaatcctca 42768454  T
Q  130 aggtttattatttctttgaattagtttatcaaagatatctaaatgacttcgtagtgattgtgtcaagtaattttggttttatgtttcagcctgacatcac 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42768453 aggtttattatttctttgaattagtttatcaaagatatctaaatgacttcgtagtgattgtgtcaagtaattttggttttatgtttcagcccgacatcac 42768354  T
Q  230 aggaccgggagtcgacatagtcgctgcttatagtgaagctgcttctccctctcagcaaaagtctgctaaacgcagatctcctttcattactttgtcggga 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||    
T  42768353 aggaccgggagtcgacatagtcgctgcttatagtgaagctgcttctccctctcaacaaaaatctgataaacgcagatctcctttcattactttgtcggga 42768254  T
Q  330 acttcaatgtcaacccctcatgtttctggcattgttggtataatcaaatctcttcatcctgattggagtccagctgctattaagtccgcgatcatgacca 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42768253 acttcaatgtcaacccctcatgtttctggcattgttggtataatcaaatctcttcatcctgattggagtccagctgctattaagtccgcgatcatgacca 42768154  T
Q  430 caggtaaagcatatataactttatacaatcttaattttaattttaatctttataatactaaaacaaattcaaatattttgcagcgagaataaaagataat 529  Q
    ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42768153 caggtaaagc----ataactttatacaatcttaattttaattttaatctttataatactaaaacaaattcaaatattttgcagcgagaataaaagataat 42768058  T
Q  530 acaggaaagcctatattggattcaacacgcataaacgcaaatccatttgcatatggtgcggggcacgtccaacctaatcatgccgtggaccctggacttg 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42768057 acaggaaagcctatattggattcaacacgcataaacgcaaatccatttgcatatggtgcggggcaagtccaacctaatcatgccgtggaccctggacttg 42767958  T
Q  630 tttatgacctaaatatcaccgactatacgaactatttgtgcaaccgtggctacaaaggttctcgccttactatatt 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42767957 tttatgacctaaatatcaccgactatacgaactatttgtgcaaccgtggctacaaaggttctcgccttactatatt 42767882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 217 - 438
Target Start/End: Complemental strand, 42715804 - 42715583
Alignment:
Q  217 agcctgacatcacaggaccgggagtcgacatagtcgctgcttatagtgaagctgcttctccctctcagcaaaagtctgctaaacgcagatctcctttcat 316  Q
    ||||||||||||| | ||| |||||||||||| | |||||||||||||||  |   ||||||||  | ||| | | || |||||||||| ||| |||||     
T  42715804 agcctgacatcaccgcaccaggagtcgacataattgctgcttatagtgaaaatatatctccctcggaacaagaatatgataaacgcagaactcttttcaa 42715705  T
Q  317 tactttgtcgggaacttcaatgtcaacccctcatgtttctggcattgttggtataatcaaatctcttcatcctgattggagtccagctgctattaagtcc 416  Q
    || | |||| |||||||||||||||   ||||||||| ||||  |||||||  || | ||||||||||||||| |||||||||| |||||| | |||||     
T  42715704 tattatgtcaggaacttcaatgtcatgtcctcatgttgctggtcttgttgggctagtaaaatctcttcatcctaattggagtcctgctgctgtcaagtca 42715605  T
Q  417 gcgatcatgaccacaggtaaag 438  Q
    || |||||||| ||||||||||    
T  42715604 gcaatcatgacaacaggtaaag 42715583  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 308 - 435
Target Start/End: Original strand, 42736172 - 42736299
Alignment:
Q  308 tcctttcattactttgtcgggaacttcaatgtcaacccctcatgtttctggcattgttggtataatcaaatctcttcatcctgattggagtccagctgct 407  Q
    |||||| || ||| |||| || ||||||||||||   || |||||| ||||  |||||||| |  | |||||| |||||||||||||||||||||| |||    
T  42736172 tccttttatgactatgtcaggcacttcaatgtcatgtccacatgttgctggacttgttggtctgcttaaatctattcatcctgattggagtccagcagct 42736271  T
Q  408 attaagtccgcgatcatgaccacaggta 435  Q
    || ||||| || ||||||||||||||||    
T  42736272 atcaagtcagcaatcatgaccacaggta 42736299  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 375 - 443
Target Start/End: Complemental strand, 42742460 - 42742392
Alignment:
Q  375 aaatctcttcatcctgattggagtccagctgctattaagtccgcgatcatgaccacaggtaaagcatat 443  Q
    |||||| | |||||||||||||||||||||||||| ||||| || |||||||| |||||||||| ||||    
T  42742460 aaatctatccatcctgattggagtccagctgctatcaagtcagcaatcatgactacaggtaaagtatat 42742392  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 375 - 443
Target Start/End: Complemental strand, 42751819 - 42751751
Alignment:
Q  375 aaatctcttcatcctgattggagtccagctgctattaagtccgcgatcatgaccacaggtaaagcatat 443  Q
    |||||| | |||||||||||||||||||||||||| ||||| || |||||||| |||||||||| ||||    
T  42751819 aaatctatccatcctgattggagtccagctgctatcaagtcagcaatcatgactacaggtaaagtatat 42751751  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 375 - 443
Target Start/End: Complemental strand, 42761281 - 42761213
Alignment:
Q  375 aaatctcttcatcctgattggagtccagctgctattaagtccgcgatcatgaccacaggtaaagcatat 443  Q
    |||||| | |||||||||||||||||||||||||| ||||| || |||||||| |||||||||| ||||    
T  42761281 aaatctatccatcctgattggagtccagctgctatcaagtcagcaatcatgactacaggtaaagtatat 42761213  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 599 - 684
Target Start/End: Complemental strand, 42715314 - 42715229
Alignment:
Q  599 caacctaatcatgccgtggaccctggacttgtttatgacctaaatatcaccgactatacgaactatttgtgcaaccgtggctacaa 684  Q
    |||||||||| ||  || |||||||||||||| |||||||||||||| || ||||||| ||||| |||||||   |||||||||||    
T  42715314 caacctaatcgtgtggtcgaccctggacttgtatatgacctaaatattactgactatatgaactttttgtgcgctcgtggctacaa 42715229  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 577 - 645
Target Start/End: Complemental strand, 42742253 - 42742185
Alignment:
Q  577 tgcatatggtgcggggcacgtccaacctaatcatgccgtggaccctggacttgtttatgacctaaatat 645  Q
    |||||||||||| |||||||| | |||||||| |||||  || || |||||||| ||||||||||||||    
T  42742253 tgcatatggtgcagggcacgttcgacctaatcttgccgcagatcccggacttgtgtatgacctaaatat 42742185  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 577 - 645
Target Start/End: Complemental strand, 42751612 - 42751544
Alignment:
Q  577 tgcatatggtgcggggcacgtccaacctaatcatgccgtggaccctggacttgtttatgacctaaatat 645  Q
    |||||||||||| |||||||| | |||||||| ||| |  || ||||||||||| ||||||||||||||    
T  42751612 tgcatatggtgcagggcacgttcgacctaatcttgcagcagatcctggacttgtgtatgacctaaatat 42751544  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 577 - 645
Target Start/End: Complemental strand, 42761074 - 42761006
Alignment:
Q  577 tgcatatggtgcggggcacgtccaacctaatcatgccgtggaccctggacttgtttatgacctaaatat 645  Q
    |||||||||||| |||||||| | |||||||| ||| |  || ||||||||||| ||||||||||||||    
T  42761074 tgcatatggtgcagggcacgttcgacctaatcttgcagcagatcctggacttgtgtatgacctaaatat 42761006  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 42742770 - 42742703
Alignment:
Q  67 catctccaattatggcttcattttcatcaagaggacctaatatcattgacccatcaatcctcaaggtt 134  Q
    ||||||||  ||| ||| ||||||||||||||||||| |||||| ||| ||| |||||||| ||||||    
T  42742770 catctccatctatagctgcattttcatcaagaggaccaaatatccttgccccttcaatccttaaggtt 42742703  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 42752129 - 42752062
Alignment:
Q  67 catctccaattatggcttcattttcatcaagaggacctaatatcattgacccatcaatcctcaaggtt 134  Q
    ||||||||  ||| ||| ||||||||||||||||||| |||||| ||| ||| |||||||| ||||||    
T  42752129 catctccatctatagctgcattttcatcaagaggaccaaatatccttgccccttcaatccttaaggtt 42752062  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 373 - 443
Target Start/End: Original strand, 23041946 - 23042016
Alignment:
Q  373 tcaaatctcttcatcctgattggagtccagctgctattaagtccgcgatcatgaccacaggtaaagcatat 443  Q
    |||||||| | |||||||||||||||||||||| ||| ||||| || |||||||| |||||||||| ||||    
T  23041946 tcaaatctgtccatcctgattggagtccagctgttatcaagtcagcaatcatgactacaggtaaagtatat 23042016  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 577 - 645
Target Start/End: Original strand, 23042246 - 23042314
Alignment:
Q  577 tgcatatggtgcggggcacgtccaacctaatcatgccgtggaccctggacttgtttatgacctaaatat 645  Q
    |||||||||||| |||||||| | |||||||| ||| |  || ||||||||||| ||||||||||||||    
T  23042246 tgcatatggtgcagggcacgttcgacctaatcttgcagcagatcctggacttgtgtatgacctaaatat 23042314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 23041634 - 23041701
Alignment:
Q  67 catctccaattatggcttcattttcatcaagaggacctaatatcattgacccatcaatcctcaaggtt 134  Q
    ||||||||  ||| ||| ||||||||||||||||||| |||||| ||| ||| |||||||| ||||||    
T  23041634 catctccatctatagctgcattttcatcaagaggaccaaatatccttgccccttcaatccttaaggtt 23041701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 566 - 645
Target Start/End: Original strand, 42315647 - 42315726
Alignment:
Q  566 gcaaatccatttgcatatggtgcggggcacgtccaacctaatcatgccgtggaccctggacttgtttatgacctaaatat 645  Q
    |||| |||||||||||||||| |||| ||||| |||||||||| |||  | |||||||||||  ||||||| || |||||    
T  42315647 gcaactccatttgcatatggttcgggtcacgttcaacctaatcttgctatagaccctggactaatttatgatcttaatat 42315726  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 345 - 435
Target Start/End: Complemental strand, 31049741 - 31049651
Alignment:
Q  345 cctcatgtttctggcattgttggtataatcaaatctcttcatcctgattggagtccagctgctattaagtccgcgatcatgaccacaggta 435  Q
    ||||||||| |||||| || |||  | |||||| | ||||||||| ||||||||||||| |||||||| || || || |||||||||||||    
T  31049741 cctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagtccagcagctattaaatcagctattatgaccacaggta 31049651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 345 - 435
Target Start/End: Complemental strand, 31162637 - 31162547
Alignment:
Q  345 cctcatgtttctggcattgttggtataatcaaatctcttcatcctgattggagtccagctgctattaagtccgcgatcatgaccacaggta 435  Q
    ||||||||| |||||| || |||  | |||||| | ||||||||| ||||||||||||| |||||||| || || ||||||||||| ||||    
T  31162637 cctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagtccagcagctattaaatcagctatcatgaccactggta 31162547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 435
Target Start/End: Original strand, 31203039 - 31203090
Alignment:
Q  384 catcctgattggagtccagctgctattaagtccgcgatcatgaccacaggta 435  Q
    |||||| ||||||||||||| |||||||| || || ||||||||||||||||    
T  31203039 catcctaattggagtccagcagctattaaatcagctatcatgaccacaggta 31203090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 435
Target Start/End: Complemental strand, 31107210 - 31107145
Alignment:
Q  370 taatcaaatctcttcatcctgattggagtccagctgctattaagtccgcgatcatgaccacaggta 435  Q
    |||||||| | ||||||||| ||||||||||||| |||||||| || || || |||||||| ||||    
T  31107210 taatcaaaacacttcatcctaattggagtccagcagctattaaatcggctataatgaccactggta 31107145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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