View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_20 (Length: 473)
Name: NF1370_low_20
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 29 - 459
Target Start/End: Original strand, 5684388 - 5684818
Alignment:
| Q |
29 |
acaacaatggaactctcatcctctttttcactctccccaaaaccaactaacttctcattctcatcctcattctctcctttccccatccaaatcctaatca |
128 |
Q |
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| T |
5684388 |
acaacaatggaactctcatcctctttttcactctccccaaaaccaactaacttctcattctcatcctcattctctcctttccccatccaaatcctaatca |
5684487 |
T |
|
| Q |
129 |
aaaacaccaaatcccgaaactaccctcttcacgttctcgcagttgcaatagacccaacaaaagacttccctagaaataacaatcctcaacgacttctaaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5684488 |
aaaacaccaaatcccgaaactaccctcttcacgttctcgcagttgcaatagacccaacaaaagacttccctagaaataacaatcctcaacgacttctaaa |
5684587 |
T |
|
| Q |
229 |
agaactagcagaacgcnnnnnnntcactaacccaaaatcaaaatcaccaccaagacgttacattttaaaacccccactagacgataaaaaactcgcagaa |
328 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5684588 |
agaactagcagaacgcaaaaaaatcactaacccaaaatcaaaatcaccaccaagacgttacattttaaaacccccactagacgataaaaaactcgcagaa |
5684687 |
T |
|
| Q |
329 |
agatttctcaacagtccacaactttcactaaaatcattcccattgttaagttcttgtctaccttcatcgcgccttaacaatgccgataaattatggatcg |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5684688 |
agatttctcaacagtccacaactttcactaaaatcattcccattgttaagttcttgtctaccttcattgcgccttaacaatgccgataaattatggatcg |
5684787 |
T |
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| Q |
429 |
atgagtatttactcgaagcgaaacaagccct |
459 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
5684788 |
atgagtatttactcgaagcgaaacaagccct |
5684818 |
T |
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