View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_21 (Length: 463)
Name: NF1370_low_21
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 486593 - 486137
Alignment:
| Q |
1 |
tcatcatgggctatagattgccaaccatcatcaatcaagacaaagccaggtggacaaccaccatcagataaatccttaacaccttcccaaactccttgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
486593 |
tcatcatgggctatagattgccaaccatcatcaatcaagacaaagccaggtggacaaccaccatcagataaatccttaacaccttcccaaactccttgag |
486494 |
T |
|
| Q |
101 |
ggtgtaccttaagataaaatgcatcccatgtacaccatccaaatttatccactattccggggacagttttttcttctagaagcttaaaggttcctaagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
486493 |
ggtgtaccttaagataaaatgcatcccatgtacaccatccaaatttatccactattccggggacagttttttcttctagaagcttaaaggttcctaagtg |
486394 |
T |
|
| Q |
201 |
ggccctcacagttttcattgcttctttcacaagcttaaatggatcattacccgcgtgaaggtaaacaacagcgttgtatcgagagtcagttactaaagtt |
300 |
Q |
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| T |
486393 |
ggccctcacagttttcattgcttctttcacaagcttaaatggatcattacccgcgtgaaggtaaacaacagcgttgtatcgagagtcagttactaaagtt |
486294 |
T |
|
| Q |
301 |
gaactactctcgacacagacagcaacgtcgtcgtcttcaccgggttgtaaagaagcacggaaagacccttctactattggaagtaatagaacatagggtc |
400 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
486293 |
gaactactctcgacacagacagcaacgttgtcgtcatcaccgggttgtaaagaagctcggaaagacccttctattattggaagtaatagaacatagggtc |
486194 |
T |
|
| Q |
401 |
gaccagagtttggatctgaacccggatttggatccgagttctggagcatgaggaatt |
457 |
Q |
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| T |
486193 |
gaccagagtttggatctgaacccggatttggatccgagttctggagcatgaggaatt |
486137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 43639795 - 43639959
Alignment:
| Q |
18 |
ttgccaaccatcatcaatcaagacaaagccaggtggacaaccaccatcagataaatccttaacaccttcccaaactccttgagggtgtaccttaagataa |
117 |
Q |
| |
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|||||||||||||||||| | ||||| | || ||||| ||||| || |||| ||||||||||||| ||||||||||||| |||||||| ||| |
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| T |
43639795 |
ttgccaaccatcatcaatgattacaaaacttggaggacacccaccttctactaaacccttaacaccttctttcactccttgagggtccaccttaaggtaa |
43639894 |
T |
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| Q |
118 |
aatgcatcccatgtacaccatccaaatttatccactattccggggacagttttttcttctagaag |
182 |
Q |
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|||||||||||||||||||||||||||||||| ||||| | || | ||||||||||||||||| |
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| T |
43639895 |
aatgcatcccatgtacaccatccaaatttatcaactatatcaggtattgttttttcttctagaag |
43639959 |
T |
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