View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_22 (Length: 458)
Name: NF1370_low_22
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 30 - 438
Target Start/End: Complemental strand, 14503515 - 14503116
Alignment:
| Q |
30 |
caaacaacatatggtaatgatgaaacaagaaaacatattattttgcctattgtgtttatatgtccttgttccttgacattcaaccaattaacttgtacct |
129 |
Q |
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| T |
14503515 |
caaacaacatatggtgatgatgaaacaagaaaacatattattttgccttttgtgtttatatgtccttgttccttgacattcaac----taacttgtacct |
14503420 |
T |
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| Q |
130 |
aaagtacattgctgaatgtttctaaatgtaatcaaagaggcatgagtttctggtttcattgagattaagtaatttatttatttatttatgctggccaatt |
229 |
Q |
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| T |
14503419 |
aaagtacattgctgaatgtttctaaatgtaatcaa-gagacatgagtttctggtttcattgagattaagtaatttatttatttat----gctggccaatt |
14503325 |
T |
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| Q |
230 |
agctgtaatgacagtgactcacaggggaccagattctgtatatgttttccatttttgttgctcttagaagttagaaaattccaatcagtcaattactata |
329 |
Q |
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| T |
14503324 |
agctgtaatgacagtgactcacaggggaccagattctgtatatgttttccatttttgttgctcttagaagttagaaaattccaattagtcaattactata |
14503225 |
T |
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| Q |
330 |
aaatttgaaaattcatagctagaaataaagggactgctggcaaaatggtaggcatcattgcttgaacccaaaaaggagaaacactgtgaaacaaaggcaa |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14503224 |
aaatttgaaaattcatagctagaaataaagggactgctggcaaaatggtaggcatcattgcttgaacccaaaaaggagaaacactgtgaaacaaaggcaa |
14503125 |
T |
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