View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_23 (Length: 449)
Name: NF1370_low_23
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 30 - 337
Target Start/End: Complemental strand, 36464153 - 36463846
Alignment:
| Q |
30 |
caaaccagacacacagaacgtgtatacgatgttttatgacttggattcgcatgatttacttccatacttccatagcttaataatgaattttattttggta |
129 |
Q |
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| T |
36464153 |
caaaccagacacacagaacgtgtatacgatgttttatgacttggattcgcatgatttacttccatacttccatagcttaataatgaattttattttggaa |
36464054 |
T |
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| Q |
130 |
agtgactacgattccattggagtttttgattggttatcttgtgaacataaacacaacctcaaacataaggatcataggtttctttccctgtctctaaact |
229 |
Q |
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| T |
36464053 |
ggtgactacgattccattggagtttttgattggttatcttgtgaacataaacacaacctcaaacataaggatcataggtttctttccctgtctctaaact |
36463954 |
T |
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| Q |
230 |
cctttaacatagacatgatgacttcataaacaagttgttccaagcttggaatcatgttaatagtgacttcaagttctcccacaattttacgagctcttat |
329 |
Q |
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| T |
36463953 |
cctttaacatagacatgatgacttcataaacaagtttttccaagcttggaatcatgttaatagtgacttcaagttctcccacaattttacgagctcttat |
36463854 |
T |
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| Q |
330 |
gtaaagtc |
337 |
Q |
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| T |
36463853 |
gtaaagtc |
36463846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 338 - 437
Target Start/End: Complemental strand, 36463181 - 36463082
Alignment:
| Q |
338 |
tgacgaatgtgagtaaagggctaaatatataatttggtgacatgattgagttatttggaaattgaaattggcatgagatccagtatggtttaaggagtat |
437 |
Q |
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| T |
36463181 |
tgacgaatgtgagtaaagggttaaatatataatttggtgacatgattgagttatttggaaattgaaattggcatgagatccagtatggtttaaggagtat |
36463082 |
T |
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