View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_24 (Length: 436)
Name: NF1370_low_24
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 154 - 411
Target Start/End: Complemental strand, 32867978 - 32867714
Alignment:
| Q |
154 |
ttattatgtaaacaattttacgcatgcataa--aaatcacatatata----aatgcccccacaacc------taaatatcctggatctgtcactaacac- |
240 |
Q |
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| T |
32867978 |
ttattatgtaaacaattttacgcatgcataataaaatcacatatatatataaatgcccccacaaccacaacctaaatatcctggatctgtcactaacact |
32867879 |
T |
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| Q |
241 |
ccaaattagaatatataaactttacc--aaaatacatggatttccaggttcaatttgataacataaatttaaacaaataccttgacgagaactttgacct |
338 |
Q |
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| T |
32867878 |
caaaattagaatatataaactttaccaaaaaatacatggatttccaggttc--------------aatttaaccaaataccttgacgaaaactctcacct |
32867793 |
T |
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| Q |
339 |
tgatttag------ttcaaatagtggtgctgctgctggttcctgaggttgcatatttgatgatgaaggtggttacggtg |
411 |
Q |
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| T |
32867792 |
tgatttagttcaaattcaaatggtagtgctacttctggttcctgaggttgcatatttgatgaagaaggttgttacggtg |
32867714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 32868039 - 32867999
Alignment:
| Q |
53 |
aatattttatatcctccatttattaaacgcagtaagatatt |
93 |
Q |
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| T |
32868039 |
aatattttatatcctccatttattaaacacagtaagatatt |
32867999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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