View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_25 (Length: 422)
Name: NF1370_low_25
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 30 - 283
Target Start/End: Complemental strand, 4151465 - 4151212
Alignment:
| Q |
30 |
gaaatatagaaaatgaaacaaaatagaaacgataattcggtaagttgcaggaaaacaaataaatcttaaacattctatctatagctagggaaagatttct |
129 |
Q |
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| T |
4151465 |
gaaatatagaaaatgaaacaaaatagaaacgatatttcggtaagttgcaggaaaacaaataaatcttaaacattctatctatagctagggaaagatttct |
4151366 |
T |
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| Q |
130 |
ctttgcaaaattgttgacacttactccgatctcttggaaaaactaatgcacctcataattctctagatagtatccttcatctgaccatgtctgcaaaacc |
229 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4151365 |
cttggcaaaattgttgacacttactccgatctcttggaaaaactaatgcacctcataattctctagatagtatccttcacctgaccatgtctgcaaaacc |
4151266 |
T |
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| Q |
230 |
caaatttagatgcaatatatgttgcaaataagaccaaaattgaaaacatgaaat |
283 |
Q |
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| T |
4151265 |
caaatttagatgcaatatatgttgcaaatcagaccgaaagtgaaagcatgaaat |
4151212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 30 - 283
Target Start/End: Complemental strand, 4167234 - 4166981
Alignment:
| Q |
30 |
gaaatatagaaaatgaaacaaaatagaaacgataattcggtaagttgcaggaaaacaaataaatcttaaacattctatctatagctagggaaagatttct |
129 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4167234 |
gaaatatagaaaatgaaacaaaatagaaacgatatttcggtaagttgcaggaaaacaaataaatcttaaacattctatctatagctagggaaagatttct |
4167135 |
T |
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| Q |
130 |
ctttgcaaaattgttgacacttactccgatctcttggaaaaactaatgcacctcataattctctagatagtatccttcatctgaccatgtctgcaaaacc |
229 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4167134 |
cttggcaaaattgttgacacttactccgatctcttggaaaaactaatgcacctcataattctctagatagtatccttcacctgaccatgtctgcaaaacc |
4167035 |
T |
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| Q |
230 |
caaatttagatgcaatatatgttgcaaataagaccaaaattgaaaacatgaaat |
283 |
Q |
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||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||| |
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| T |
4167034 |
caaatttagatgcaatatatgttgcaaatcagaccgaaagtgaaagcatgaaat |
4166981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 292 - 397
Target Start/End: Complemental strand, 4150882 - 4150777
Alignment:
| Q |
292 |
attcaatccttactaaaggagcatcagagagagttgtaatgtatctacagacatttcataacaagagagactaagggaaataaaacaaaaaggccaaatc |
391 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4150882 |
attcaatccttactatacgagcatcagagagagttgtaatgtatctacagacatttcataacaagagagaccaagggaaataaaacaaaaaggccaaatc |
4150783 |
T |
|
| Q |
392 |
agaatg |
397 |
Q |
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|||||| |
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| T |
4150782 |
agaatg |
4150777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 292 - 397
Target Start/End: Complemental strand, 4166651 - 4166546
Alignment:
| Q |
292 |
attcaatccttactaaaggagcatcagagagagttgtaatgtatctacagacatttcataacaagagagactaagggaaataaaacaaaaaggccaaatc |
391 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4166651 |
attcaatccttactatacgagcatcagagagagttgtaatgtatctacagacatttcataacaagagagaccaagggaaataaaacaaaaaggccaaatc |
4166552 |
T |
|
| Q |
392 |
agaatg |
397 |
Q |
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|||||| |
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| T |
4166551 |
agaatg |
4166546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 7021244 - 7021167
Alignment:
| Q |
34 |
tatagaaaatgaaacaaaatagaaacgataattcggtaagttgcaggaaaacaaataaa-tcttaaacattctatcta |
110 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| ||||||| |
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| T |
7021244 |
tatagaaaatgaaacaaaatagaaacgataattcaataagttgcaggaaaataaataaattcttaaacatgctatcta |
7021167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 7021054 - 7021004
Alignment:
| Q |
219 |
tctgcaaaacccaaatttagatgcaatatatgttgcaaataagaccaaaat |
269 |
Q |
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|||| |||||| ||||||||| |||||||||||||||||| |||| ||||| |
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| T |
7021054 |
tctgtaaaacctaaatttagaggcaatatatgttgcaaatcagacaaaaat |
7021004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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