View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_26 (Length: 421)
Name: NF1370_low_26
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 9e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 6 - 196
Target Start/End: Complemental strand, 40676790 - 40676601
Alignment:
| Q |
6 |
attttcaacctccaaaattttcccgttccttcttctctaaactcgcaaacaaaccttaagaaattcttaactgattggagctgtcatgtcgtagtaagaa |
105 |
Q |
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| T |
40676790 |
attttcaacctccaaaattttcctgttccctcccctctaaactcgcat-caaatcttaaaaaattcttaactgattggagctgtcatgtcgtagtaagaa |
40676692 |
T |
|
| Q |
106 |
attcttgaaaaattggagcagtctggtcgtggctgcacctagagaagtcccattatccaaatcacctggagtcccaacaggcctataaccc |
196 |
Q |
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| T |
40676691 |
attcttgaaaaattggagcagtctggtcgtggctgcacctagagaagtcccattatccaaatcaccgggagtcccaacaggcctataaccc |
40676601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 197 - 421
Target Start/End: Complemental strand, 40676529 - 40676317
Alignment:
| Q |
197 |
aattaacttacacgtaggtactagttagaaatgctgaataaaacaaccaaaggattaattaatactaaaacagaagaaaattctacagagctttccttat |
296 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40676529 |
aattaacttacacgtaggtactagttagaaatgttgaataaaacaaccgaaggattaattaatactaaaacagaagaaaattctacagagctttccttgt |
40676430 |
T |
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| Q |
297 |
ttatatcatcaaagctgctattgttgnnnnnnnnnnnnnnnnnnnnngacatggcgtgcaaataatagtcaattacttctgcagtttggcaaaagaatat |
396 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40676429 |
ttatatcatcaaagctgctattgttgatatatatat------------acatggcgtgtaaataatagtcaattacttctgcagtttggcaaaagaatat |
40676342 |
T |
|
| Q |
397 |
gaaataactacatttttcaatttaa |
421 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
40676341 |
gaaataactacatttttcaatttaa |
40676317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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