View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1370_low_27 (Length: 421)

Name: NF1370_low_27
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1370_low_27
NF1370_low_27
[»] chr5 (2 HSPs)
chr5 (29-412)||(9603066-9603444)
chr5 (29-71)||(9589103-9589145)
[»] chr8 (15 HSPs)
chr8 (29-112)||(6457982-6458065)
chr8 (301-407)||(6364468-6364574)
chr8 (207-395)||(6452071-6452259)
chr8 (310-405)||(6353604-6353699)
chr8 (310-405)||(6392100-6392195)
chr8 (209-395)||(6458166-6458352)
chr8 (33-112)||(6451896-6451975)
chr8 (311-405)||(7460677-7460771)
chr8 (310-405)||(6290512-6290607)
chr8 (299-412)||(6275749-6275862)
chr8 (310-377)||(6264935-6265002)
chr8 (310-395)||(6411264-6411349)
chr8 (296-412)||(6371294-6371410)
chr8 (28-76)||(7460171-7460219)
chr8 (28-76)||(7471747-7471795)
[»] chr2 (3 HSPs)
chr2 (310-395)||(42694396-42694481)
chr2 (33-79)||(42687709-42687755)
chr2 (231-281)||(42687290-42687340)
[»] chr3 (3 HSPs)
chr3 (299-339)||(35706521-35706561)
chr3 (299-333)||(35722349-35722383)
chr3 (299-335)||(35728277-35728313)


Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 29 - 412
Target Start/End: Complemental strand, 9603444 - 9603066
Alignment:
Q  29 aaggaagtcagatgacttcaagtgtccaaaattttcatctcttggaacatacatcacacctggtctctcacttttaggatctgtcaacaataaaatatca 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603444 aaggaagtcagatgacttcaagtgtccaaaattttcatctcttggaacatacatcacacctggtctctcacttttaggatctgtcaacaataaaatatca 9603345  T
Q  129 ttagaaccgcattattgtctctcatatttagtctttaaagtatatgaaannnnnnnnnnnnnnnnnntttaccctttttagttggttttcgaccacttct 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||||    
T  9603344 ttagaaccgcattattgtctctcatatttagtctttaaagtatatgaaaattaatatttttt-----tttaccctttttagttggttttcgaccacttct 9603250  T
Q  229 aacccttcgagggtaaggatgagtgctagaccctccaaggaccggacgagcaagcttgacatcttcatctggatcaccaagatcattgtagacatcataa 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603249 aacccttcgagggtaaggatgagtgctagaccctccaaggaccggacgagcaagcttgacatcttcatctggatcaccaagatcattgtagacatcataa 9603150  T
Q  329 tcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagaataat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9603149 tcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagactaat 9603066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 9589145 - 9589103
Alignment:
Q  29 aaggaagtcagatgacttcaagtgtccaaaattttcatctctt 71  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||    
T  9589145 aaggaagtctgatgactttaagtgaccaaaattttcatctctt 9589103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 6457982 - 6458065
Alignment:
Q  29 aaggaagtcagatgacttcaagtgtccaaaattttcatctcttggaacatacatcacacctggtctctcacttttaggatctgt 112  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||||||| |||||||||||    
T  6457982 aaggaagtctgatgacttcaagtgaccaaaattttcatctcttggaacataaatcacacccggtttctcactcttaggatctgt 6458065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 301 - 407
Target Start/End: Original strand, 6364468 - 6364574
Alignment:
Q  301 atcaccaagatcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctg 400  Q
    |||||| | |||||||||||||||||||||||| | |||||||||||| || || | |||||| ||||||||||||| | | | ||||||||||||||||    
T  6364468 atcacccaaatcattgtagacatcataatcatatattctttcccattccttacgctctccagttccatctcctcttaaagtcttcaattcttcttgtctg 6364567  T
Q  401 tagtaga 407  Q
    |||||||    
T  6364568 tagtaga 6364574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 207 - 395
Target Start/End: Original strand, 6452071 - 6452259
Alignment:
Q  207 tagttggttttcgaccacttctaacccttcgagggtaaggatgagtgctagaccctccaaggaccggacgagcaagcttgacatcttcatctggatcacc 306  Q
    |||||||||||| |||| |||||||||| |||||||| ||||| |||||||| ||||||||||  |||||| ||||   | |  |  |||| ||||  ||    
T  6452071 tagttggttttctaccagttctaaccctacgagggtagggatgggtgctagatcctccaaggattggacgaacaagggcgtcgccaccatcaggatttcc 6452170  T
Q  307 aagatcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttctt 395  Q
     |||||||| || ||||||||||| || |  || ||||||||||| |||| ||| || ||||||||||||||||| ||||| |||||||    
T  6452171 gagatcattataaacatcataatcgtatatcctatcccattctttgcgttctccggttccatctcctcttagattctgcaactcttctt 6452259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 405
Target Start/End: Original strand, 6353604 - 6353699
Alignment:
Q  310 atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagta 405  Q
    ||||||||||||||| |||||||| | |||||||||||| || || | |||||| ||||||||||||| | | | |||||||||||||||||||||    
T  6353604 atcattgtagacatcgtaatcatatattctttcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgtagta 6353699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 405
Target Start/End: Original strand, 6392100 - 6392195
Alignment:
Q  310 atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagta 405  Q
    |||||||||||||||||||||||| | ||| |||||||| || || | |||||| ||||||||||||| | | | |||||||||||||||||||||    
T  6392100 atcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttcttgtctgtagta 6392195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 395
Target Start/End: Original strand, 6458166 - 6458352
Alignment:
Q  209 gttggttttcgaccacttctaacccttcgagggtaaggatgagtgctagaccctccaaggaccggacgagcaagcttgacatcttcatctggatcaccaa 308  Q
    |||||||||| ||||||||||||||| |||||||| ||||  ||||| || || |||||||| |||||  ||||   | || |  |||||||||  || |    
T  6458166 gttggttttctaccacttctaaccctgcgagggtagggataggtgcttgatcccccaaggacaggacggacaagtgcgtcaccaccatctggatttccca 6458265  T
Q  309 gatcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttctt 395  Q
     |||||| || | |||||||||||||||||| |||  |||||| || | |||||| ||||||||||||||| | ||||| |||||||    
T  6458266 aatcattataaatatcataatcataaactctatccgcttctttgcgctctccagttccatctcctcttagagtctgcaactcttctt 6458352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 6451896 - 6451975
Alignment:
Q  33 aagtcagatgacttcaagtgtccaaaattttcatctcttggaacatacatcacacctggtctctcacttttaggatctgt 112  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||| ||  |||| ||| ||||||| ||| |||||||    
T  6451896 aagtctgatgacttcaagtgaccaaaattttcatctcttggaacataaatggcaccaggtttctcactcttaagatctgt 6451975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 405
Target Start/End: Original strand, 7460677 - 7460771
Alignment:
Q  311 tcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagta 405  Q
    ||||||||||||||||||||||| | ||| |||||||| || || | ||| || ||||||||||||| | | | |||||||||||||||||||||    
T  7460677 tcattgtagacatcataatcatatattctgtcccattccttgcgctctcccgttccatctcctcttaaagtcttcaattcttcttgtctgtagta 7460771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 405
Target Start/End: Original strand, 6290512 - 6290607
Alignment:
Q  310 atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagta 405  Q
    ||||||||||||||| |||||||| | |||||||||||| || || | ||| || ||||||||||||| | | | ||||||||||||||| |||||    
T  6290512 atcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctgttccatctcctcttaaagtcttcaattcttcttgtctatagta 6290607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 412
Target Start/End: Original strand, 6275749 - 6275862
Alignment:
Q  299 ggatcaccaagatcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtc 398  Q
    |||||||| | ||||||||||||||| || ||||| |  |||||||||||||| || | ||| || ||||||||||||| | | | ||| ||||||||||    
T  6275749 ggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtc 6275848  T
Q  399 tgtagtagaataat 412  Q
    | ||||||| ||||    
T  6275849 tatagtagactaat 6275862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 377
Target Start/End: Original strand, 6264935 - 6265002
Alignment:
Q  310 atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctctta 377  Q
    ||||||||| |||||||||||||||||||| ||||||||||| || |  || || |||||||||||||    
T  6264935 atcattgtaaacatcataatcataaactctgtcccattctttgcgctcccccgttccatctcctctta 6265002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 395
Target Start/End: Original strand, 6411264 - 6411349
Alignment:
Q  310 atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttctt 395  Q
    |||||||||||||||||||||||| | ||| |||||| | || || | |||||| ||||||||||||| | | | |||||||||||    
T  6411264 atcattgtagacatcataatcatatattctgtcccataccttacgctctccagttccatctcctcttaaagtcttcaattcttctt 6411349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 412
Target Start/End: Original strand, 6371294 - 6371410
Alignment:
Q  296 tctggatcaccaagatcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttctt 395  Q
    ||||| ||||| | ||||||||||||||| || ||||| |  || ||||||||||| || |  || || ||||||||||||| | | | ||| |||||||    
T  6371294 tctggttcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttccatctcctcttaaagtcttcaactcttctt 6371393  T
Q  396 gtctgtagtagaataat 412  Q
    |||||||||||| ||||    
T  6371394 gtctgtagtagactaat 6371410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 7460171 - 7460219
Alignment:
Q  28 caaggaagtcagatgacttcaagtgtccaaaattttcatctcttggaac 76  Q
    |||| |||||||||||||||||||| |||||   |||||||||||||||    
T  7460171 caagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaac 7460219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 7471747 - 7471795
Alignment:
Q  28 caaggaagtcagatgacttcaagtgtccaaaattttcatctcttggaac 76  Q
    |||| |||||||||||||||||||| |||||   |||||||||||||||    
T  7471747 caagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaac 7471795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 395
Target Start/End: Original strand, 42694396 - 42694481
Alignment:
Q  310 atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttctt 395  Q
    |||||||||||||||||||||||| | ||||||||||||||| |||| ||| || ||||||||||||| ||| | |||||||||||    
T  42694396 atcattgtagacatcataatcatagattctttcccattctttgcgttctcctgttccatctcctcttaaattgttcaattcttctt 42694481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 42687755 - 42687709
Alignment:
Q  33 aagtcagatgacttcaagtgtccaaaattttcatctcttggaacata 79  Q
    ||||| || ||||||||||| ||||||||||||||||||||||||||    
T  42687755 aagtctgaggacttcaagtgaccaaaattttcatctcttggaacata 42687709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 42687340 - 42687290
Alignment:
Q  231 cccttcgagggtaaggatgagtgctagaccctccaaggaccggacgagcaa 281  Q
    |||| |||||||||||||| ||||||||||||||||| || || |||||||    
T  42687340 ccctgcgagggtaaggatgtgtgctagaccctccaagaacagggcgagcaa 42687290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 35706561 - 35706521
Alignment:
Q  299 ggatcaccaagatcattgtagacatcataatcataaactct 339  Q
    ||||| ||||||||||||||||||||||| |||||||||||    
T  35706561 ggatctccaagatcattgtagacatcatagtcataaactct 35706521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 333
Target Start/End: Complemental strand, 35722383 - 35722349
Alignment:
Q  299 ggatcaccaagatcattgtagacatcataatcata 333  Q
    ||||| |||||||||||||||||||||||||||||    
T  35722383 ggatctccaagatcattgtagacatcataatcata 35722349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 35728277 - 35728313
Alignment:
Q  299 ggatcaccaagatcattgtagacatcataatcataaa 335  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  35728277 ggatctccaagatcattgtagacatcatagtcataaa 35728313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 679 times since January 2019
Visitors: 8814