View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1370_low_29 (Length: 416)

Name: NF1370_low_29
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1370_low_29
NF1370_low_29
[»] chr2 (11 HSPs)
chr2 (1-195)||(28834822-28835015)
chr2 (186-326)||(28834650-28834794)
chr2 (362-416)||(28834559-28834613)
chr2 (180-302)||(19206434-19206556)
chr2 (179-315)||(12676420-12676556)
chr2 (198-238)||(2687100-2687140)
chr2 (262-302)||(6788500-6788540)
chr2 (81-137)||(8001961-8002017)
chr2 (178-238)||(21603527-21603587)
chr2 (107-139)||(29926869-29926901)
chr2 (266-302)||(39095111-39095147)
[»] chr5 (18 HSPs)
chr5 (179-256)||(37181246-37181323)
chr5 (179-302)||(917089-917212)
chr5 (179-302)||(33598267-33598390)
chr5 (211-305)||(9607363-9607457)
chr5 (182-302)||(4438626-4438745)
chr5 (179-302)||(3599847-3599971)
chr5 (174-254)||(34795397-34795477)
chr5 (211-302)||(11534929-11535020)
chr5 (107-139)||(9572513-9572545)
chr5 (262-302)||(11498040-11498080)
chr5 (262-302)||(11505396-11505436)
chr5 (262-302)||(11512790-11512830)
chr5 (262-302)||(11520166-11520206)
chr5 (262-302)||(11527574-11527614)
chr5 (109-153)||(19342347-19342391)
chr5 (43-139)||(37853434-37853530)
chr5 (266-302)||(38416092-38416128)
chr5 (211-275)||(39194879-39194943)
[»] chr6 (16 HSPs)
chr6 (177-316)||(34937467-34937606)
chr6 (179-240)||(3711307-3711368)
chr6 (64-137)||(25085068-25085141)
chr6 (243-316)||(29920457-29920530)
chr6 (186-302)||(10067659-10067775)
chr6 (211-302)||(9762576-9762667)
chr6 (211-286)||(10219605-10219680)
chr6 (211-302)||(33551048-33551139)
chr6 (65-123)||(9762610-9762668)
chr6 (180-238)||(31142032-31142090)
chr6 (95-140)||(11589963-11590008)
chr6 (211-240)||(12278223-12278252)
chr6 (41-122)||(19264720-19264801)
chr6 (177-238)||(29927652-29927713)
chr6 (109-158)||(33187117-33187166)
chr6 (108-152)||(8161435-8161479)
[»] chr4 (18 HSPs)
chr4 (179-302)||(8170892-8171015)
chr4 (94-195)||(51226032-51226133)
chr4 (181-302)||(17381483-17381604)
chr4 (249-302)||(35255464-35255517)
chr4 (182-298)||(13834383-13834499)
chr4 (179-239)||(48973334-48973394)
chr4 (182-302)||(51150892-51151012)
chr4 (211-302)||(8755927-8756018)
chr4 (66-129)||(46804807-46804870)
chr4 (174-256)||(24806656-24806738)
chr4 (197-238)||(4161832-4161873)
chr4 (243-316)||(35763096-35763169)
chr4 (249-298)||(39330961-39331010)
chr4 (212-313)||(52700955-52701056)
chr4 (266-302)||(924831-924867)
chr4 (67-135)||(21241775-21241843)
chr4 (245-301)||(21241787-21241843)
chr4 (262-302)||(56095072-56095112)
[»] chr3 (8 HSPs)
chr3 (187-269)||(53705891-53705973)
chr3 (179-298)||(34979107-34979226)
chr3 (249-300)||(34294106-34294157)
chr3 (211-302)||(45681174-45681265)
chr3 (66-128)||(40619182-40619244)
chr3 (187-253)||(50271494-50271560)
chr3 (212-256)||(48048014-48048058)
chr3 (162-258)||(54630832-54630928)
[»] chr1 (11 HSPs)
chr1 (175-239)||(39330126-39330191)
chr1 (179-238)||(6541120-6541179)
chr1 (95-190)||(6727926-6728021)
chr1 (220-302)||(30519090-30519172)
chr1 (179-239)||(34826993-34827053)
chr1 (246-302)||(52361952-52362008)
chr1 (211-302)||(30050557-30050648)
chr1 (211-241)||(12238434-12238464)
chr1 (64-137)||(27900669-27900742)
chr1 (62-123)||(29795257-29795318)
chr1 (186-302)||(2998931-2999047)
[»] scaffold0003 (4 HSPs)
scaffold0003 (211-302)||(89061-89152)
scaffold0003 (224-306)||(104381-104463)
scaffold0003 (211-275)||(109086-109150)
scaffold0003 (115-171)||(109222-109277)
[»] chr8 (11 HSPs)
chr8 (181-239)||(21600517-21600575)
chr8 (179-239)||(16338265-16338325)
chr8 (262-313)||(8491345-8491396)
chr8 (233-316)||(9598056-9598139)
chr8 (211-302)||(34281386-34281477)
chr8 (182-256)||(1249211-1249285)
chr8 (46-171)||(8982217-8982343)
chr8 (43-88)||(2987177-2987222)
chr8 (108-141)||(10708439-10708472)
chr8 (211-256)||(21145467-21145512)
chr8 (108-140)||(26018734-26018766)
[»] scaffold0002 (1 HSPs)
scaffold0002 (177-238)||(349125-349186)
[»] chr7 (2 HSPs)
chr7 (262-302)||(8062884-8062924)
chr7 (211-239)||(29778712-29778740)


Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 28835015 - 28834822
Alignment:
Q  1 aaaaactatagatatatatttggggtaatcactttcataggtaacgattaatcacaatagtttttaatgtatcaaaaatttaaaataggatgagattgta 100  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  28835015 aaaaactatagatatatatttggggtaatca-tttgataggtaacgattaatcacaatagtttttaatatatcaaaaatttaaaatagtgtgagattgta 28834917  T
Q  101 cactatattagtcaaaatagtctttgacattaaaatagtttctcgatgttgacaataagctttttcttatagtgaataatatgacaataagtaaa 195  Q
     | ||| || ||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28834916 tattatgtttgtcaaaatattctttgacattaaaatagtatttcgatgttgacaataagctttttcttatagtgaataatatgacaataaataaa 28834822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 28834794 - 28834650
Alignment:
Q  186 aataagtaaagatattgaagaacacatatgacaatat----taacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatact 281  Q
    |||||||||| |||||||||||| |||||||||||||    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||    
T  28834794 aataagtaaatatattgaagaactcatatgacaatatatattaacgaaacattttaacgcgagagattattttgcttgataaagtacataatcagagact 28834695  T
Q  282 attttaagattttgatacattcaataattattgtgcctattgatt 326  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||    
T  28834694 attttaagattttgatacattcaatgattattgtacctattgatt 28834650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 28834613 - 28834559
Alignment:
Q  362 aaattaggatatgatccttctttttcttccctctcctaacttttcctacttttct 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28834613 aaattaggatatgatccttctttttcttccctctcctaacttttcctacttttct 28834559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 302
Target Start/End: Original strand, 19206434 - 19206556
Alignment:
Q  180 tatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagata 279  Q
    |||||||||||||||| ||||||||| ||  ||| |||||||||||  | |||| |||||   ||||| |||||||| | | |||||||||||||||| |    
T  19206434 tatgacaataagtaaatatattgaaggactaataagacaatattaataatacatcttaacatcagagaatattttgactaacaaagtgcataatcagaaa 19206533  T
Q  280 ctattttaagattttgatacatt 302  Q
    ||||||||| |||||||||||||    
T  19206534 ctattttaaaattttgatacatt 19206556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 315
Target Start/End: Complemental strand, 12676556 - 12676420
Alignment:
Q  179 atatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagat 278  Q
    |||||||||||  |||  ||||||| | ||  |||||||||||||||  |||||||||||||  ||| |||||||||| | |  ||||||| ||||| |     
T  12676556 atatgacaatagataagtatattgagggactaatatgacaatattaataaaacattttaacgtcagaaattattttgactaactaagtgcacaatcatag 12676457  T
Q  279 actattttaagattttgatacattcaataattattgt 315  Q
    |||||||||| |||| |||||||| ||  ||||||||    
T  12676456 actattttaacatttcgatacattaaaagattattgt 12676420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 2687100 - 2687140
Alignment:
Q  198 tattgaagaacacatatgacaatattaacgaaacattttaa 238  Q
    |||| ||||||| ||| ||||||||||||||||||||||||    
T  2687100 tattcaagaacaaataagacaatattaacgaaacattttaa 2687140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 6788500 - 6788540
Alignment:
Q  262 aaagtgcataatcagatactattttaagattttgatacatt 302  Q
    |||||||| ||||||| |||||||||| |||||||||||||    
T  6788500 aaagtgcacaatcagaaactattttaaaattttgatacatt 6788540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 8001961 - 8002017
Alignment:
Q  81 taaaataggatgagattgtacactatattagtcaaaatagtctttgacattaaaata 137  Q
    |||||||| ||  ||||| ||||| |||||||||||||||||| |||| ||||||||    
T  8001961 taaaatagtatttgattgaacactctattagtcaaaatagtctctgacgttaaaata 8002017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 21603587 - 21603527
Alignment:
Q  178 aatatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaa 238  Q
    ||||||||||||| |||   |||||||||||  | |||||||||||||||||| |||||||    
T  21603587 aatatgacaataactaagtctattgaagaactaacatgacaatattaacgaaatattttaa 21603527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 29926901 - 29926869
Alignment:
Q  107 attagtcaaaatagtctttgacattaaaatagt 139  Q
    |||||||||||||||||||||| ||||||||||    
T  29926901 attagtcaaaatagtctttgacgttaaaatagt 29926869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 39095147 - 39095111
Alignment:
Q  266 tgcataatcagatactattttaagattttgatacatt 302  Q
    |||| |||||||||||||||||| |||||||||||||    
T  39095147 tgcacaatcagatactattttaaaattttgatacatt 39095111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 37181246 - 37181323
Alignment:
Q  179 atatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattattttga 256  Q
    |||||||||| |||||  ||||| | ||||  ||||||||||||||||||||||||||||||| ||||||||||||||    
T  37181246 atatgacaattagtaagtatattaatgaaccaatatgacaatattaacgaaacattttaacgctagagattattttga 37181323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 302
Target Start/End: Original strand, 917089 - 917212
Alignment:
Q  179 atatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagat 278  Q
    ||||||||| || |||| ||||||||  ||  |||||||||||||||| ||| ||||||  | |||||| |||||||||  |||||||| | ||||| |     
T  917089 atatgacaaaaaataaatatattgaatgactaatatgacaatattaacaaaatattttattgtgagagactattttgataaataaagtgtacaatcaaag 917188  T
Q  279 actattttaagattttgatacatt 302  Q
    |||||||||| |||| ||||||||    
T  917189 actattttaaaatttcgatacatt 917212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 302
Target Start/End: Original strand, 33598267 - 33598390
Alignment:
Q  179 atatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagat 278  Q
    |||| |||||||||||| ||||| || |||  || |||||||||||| ||||||||||||    ||| |||||||||| | ||| |||| |||||||       
T  33598267 atattacaataagtaaatatattcaataactaatgtgacaatattaaagaaacattttaatataagaaattattttgactaatatagtgtataatcaacg 33598366  T
Q  279 actattttaagattttgatacatt 302  Q
    |||||||||| |||||||||||||    
T  33598367 actattttaaaattttgatacatt 33598390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 9607363 - 9607457
Alignment:
Q  211 atatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatactattttaagattttgatacattcaa 305  Q
    ||||||||||| ||||| ||||||||||| |||| ||||||||||||| | ||| |||| ||||||  ||| |||||  |||| |||||||||||    
T  9607363 atatgacaatactaacggaacattttaacacgagggattattttgattaagaaaatgcacaatcagtgactgttttagaatttggatacattcaa 9607457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 4438626 - 4438745
Alignment:
Q  182 tgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatact 281  Q
    ||||||||| |||| ||||||||| |||||||| |||| || ||| || ||||| | ||  |||||||||||||| | ||| |||||| |||||||  ||    
T  4438626 tgacaataaataaatatattgaaggacacatattacaaaatcaacaaaccatttcatcgtaagagattattttgactaatatagtgcacaatcagagtct 4438725  T
Q  282 attttaagattttgatacatt 302  Q
    ||||||| |||||| ||||||    
T  4438726 attttaa-attttggtacatt 4438745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 302
Target Start/End: Complemental strand, 3599971 - 3599847
Alignment:
Q  179 atatgacaataagtaaagatattgaagaacaca-tatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcaga 277  Q
    |||||||||||| |||| || |||||  ||| | |||||||||||| |||||| ||||||||| ||||||  ||||||||| | ||| | || ||||| |    
T  3599971 atatgacaataaataaatatgttgaaagacataatatgacaatatttacgaaatattttaacgtgagagaccattttgattaacaaaatacacaatcaaa 3599872  T
Q  278 tactattttaagattttgatacatt 302  Q
     |||||||||| ||||  |||||||    
T  3599871 cactattttaaaatttcaatacatt 3599847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 34795397 - 34795477
Alignment:
Q  174 gaataatatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattatttt 254  Q
    ||||||||||| ||||||||   ||||| ||| ||  ||||||||||||||||||| ||||||||| ||||| | ||||||    
T  34795397 gaataatatgataataagtacttatattaaaggaccgatatgacaatattaacgaaccattttaacacgagaaactatttt 34795477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 11534929 - 11535020
Alignment:
Q  211 atatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatactattttaagattttgatacatt 302  Q
    |||||||||||||||| ||  ||||||| |  ||||| ||| |||| |   |||||| ||||||| |||||||||||| |||||||||||||    
T  11534929 atatgacaatattaacaaattattttaatgttagagactatgttgactagaaaagtgaataatcaaatactattttaaaattttgatacatt 11535020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 9572513 - 9572545
Alignment:
Q  107 attagtcaaaatagtctttgacattaaaatagt 139  Q
    |||||||||||||||||||||| ||||||||||    
T  9572513 attagtcaaaatagtctttgacgttaaaatagt 9572545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 11498040 - 11498080
Alignment:
Q  262 aaagtgcataatcagatactattttaagattttgatacatt 302  Q
    |||||| ||||||| |||||||||||| |||||||||||||    
T  11498040 aaagtgaataatcaaatactattttaaaattttgatacatt 11498080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 11505396 - 11505436
Alignment:
Q  262 aaagtgcataatcagatactattttaagattttgatacatt 302  Q
    |||||| ||||||| |||||||||||| |||||||||||||    
T  11505396 aaagtgaataatcaaatactattttaaaattttgatacatt 11505436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 11512790 - 11512830
Alignment:
Q  262 aaagtgcataatcagatactattttaagattttgatacatt 302  Q
    |||||| ||||||| |||||||||||| |||||||||||||    
T  11512790 aaagtgaataatcaaatactattttaaaattttgatacatt 11512830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 11520166 - 11520206
Alignment:
Q  262 aaagtgcataatcagatactattttaagattttgatacatt 302  Q
    |||||| ||||||| |||||||||||| |||||||||||||    
T  11520166 aaagtgaataatcaaatactattttaaaattttgatacatt 11520206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 11527574 - 11527614
Alignment:
Q  262 aaagtgcataatcagatactattttaagattttgatacatt 302  Q
    |||||| ||||||| |||||||||||| |||||||||||||    
T  11527574 aaagtgaataatcaaatactattttaaaattttgatacatt 11527614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 19342347 - 19342391
Alignment:
Q  109 tagtcaaaatagtctttgacattaaaatagtttctcgatgttgac 153  Q
    ||||||||||||||| | || ||||||||||||||| ||||||||    
T  19342347 tagtcaaaatagtctctaacgttaaaatagtttctcaatgttgac 19342391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 37853530 - 37853434
Alignment:
Q  43 aacgattaatcacaatagtttttaatgtatcaaaaatttaaaataggatgagattgtacactatattagtcaaaatagtctttgacattaaaatagt 139  Q
    ||||| || ||| ||||||||| || |||| |||| ||||||||||  |   |||||| ||| | |||||||||||||||| | |||||||||||||    
T  37853530 aacgagtagtcataatagttttcaacgtattaaaattttaaaatagtttttaattgtatactttgttagtcaaaatagtctctaacattaaaatagt 37853434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 38416128 - 38416092
Alignment:
Q  266 tgcataatcagatactattttaagattttgatacatt 302  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  38416128 tgcattatcagatactattttaaaattttgatacatt 38416092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 39194943 - 39194879
Alignment:
Q  211 atatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatca 275  Q
    |||||||||||||||||||||||||||| |  || || |||||||| | | |||||||| |||||    
T  39194943 atatgacaatattaacgaaacattttaatggcagtgactattttgactaacaaagtgcacaatca 39194879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 177 - 316
Target Start/End: Complemental strand, 34937606 - 34937467
Alignment:
Q  177 taatatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcag 276  Q
    ||||||||||||||||||| ||| ||||| ||  |||||| |||||||| ||||||||||||||  ||| |||||||||| | |   |||||| |||| |    
T  34937606 taatatgacaataagtaaatatactgaaggaccaatatgaaaatattaatgaaacattttaacgtaagatattattttgactaacttagtgcacaatcgg 34937507  T
Q  277 atactattttaagattttgatacattcaataattattgtg 316  Q
    ||| |||||| | |||| |||||||| || || |||||||    
T  34937506 ataatattttgaaatttggatacattgaagaactattgtg 34937467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 3711368 - 3711307
Alignment:
Q  179 atatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacg 240  Q
    |||| ||| ||| |||| ||||||| ||||  ||||||||||||||||||||||||||||||    
T  3711368 atataacattaaataaatatattgaggaactaatatgacaatattaacgaaacattttaacg 3711307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 25085141 - 25085068
Alignment:
Q  64 ttaatgtatcaaaaatttaaaataggatgagattgtacactatattagtcaaaatagtctttgacattaaaata 137  Q
    |||||||||||||| |||||||||   |  |||||| |||| | |||||||||||||||||| |||||||||||    
T  25085141 ttaatgtatcaaaattttaaaatactttttgattgtgcactttgttagtcaaaatagtctttaacattaaaata 25085068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 29920530 - 29920457
Alignment:
Q  243 agagattattttgattgataaagtgcataatcagatactattttaagattttgatacattcaataattattgtg 316  Q
    |||||||||||| ||| ||||| |||||||||| | |||||||| | ||||||||||||| ||  |||||||||    
T  29920530 agagattattttaattaataaaatgcataatcaaaaactattttgaaattttgatacattgaaggattattgtg 29920457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 302
Target Start/End: Original strand, 10067659 - 10067775
Alignment:
Q  186 aataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatactattt 285  Q
    |||||||||  ||||||||  ||  |||||||||||||||| ||  ||||||| |  ||||| |||||||||| | ||| | || ||||||| |||||||    
T  10067659 aataagtaagtatattgaatgactaatatgacaatattaacaaagtattttaatgtcagagactattttgattaacaaaatacacaatcagagactattt 10067758  T
Q  286 taagattttgatacatt 302  Q
    ||| |||| ||||||||    
T  10067759 taaaatttcgatacatt 10067775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 9762576 - 9762667
Alignment:
Q  211 atatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatactattttaagattttgatacatt 302  Q
    |||||| ||||||| ||| ||||||||||   |||||  ||||||| | ||| |||||| ||||| | |||||||||| |||||||||||||    
T  9762576 atatgataatattagcgagacattttaacagaagagaccattttgactaatatagtgcacaatcaaaaactattttaaaattttgatacatt 9762667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 286
Target Start/End: Complemental strand, 10219680 - 10219605
Alignment:
Q  211 atatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatactatttt 286  Q
    |||||||||||||||||||  |||||||||  ||||| |||||||| | | |||||||| ||||||  ||||||||    
T  10219680 atatgacaatattaacgaattattttaacgtcagagactattttgactaacaaagtgcacaatcaggaactatttt 10219605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 33551048 - 33551139
Alignment:
Q  211 atatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatactattttaagattttgatacatt 302  Q
    |||||| |||||||| ||||||||| |||   ||| |||||||||| | |  || |||| ||||||||| |||||||| |||||||||||||    
T  33551048 atatgataatattaaagaaacatttcaacatcagaaattattttgactaacgaaatgcacaatcagataatattttaaaattttgatacatt 33551139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 9762668 - 9762610
Alignment:
Q  65 taatgtatcaaaaatttaaaataggatgagattgtacactatattagtcaaaatagtct 123  Q
    ||||||||||||| ||||||||||  |  |||||| |||||||||||||||||| ||||    
T  9762668 taatgtatcaaaattttaaaatagtttttgattgtgcactatattagtcaaaatggtct 9762610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 31142090 - 31142032
Alignment:
Q  180 tatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaa 238  Q
    |||||||||||||||| ||||||||| ||  ||||||||||||||| |||  |||||||    
T  31142090 tatgacaataagtaaatatattgaagtactgatatgacaatattaatgaagtattttaa 31142032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 11589963 - 11590008
Alignment:
Q  95 attgtacactatattagtcaaaatagtctttgacattaaaatagtt 140  Q
    ||||||||||   |||||||||||||||||||| ||||||||||||    
T  11589963 attgtacacttcgttagtcaaaatagtctttgatattaaaatagtt 11590008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 240
Target Start/End: Original strand, 12278223 - 12278252
Alignment:
Q  211 atatgacaatattaacgaaacattttaacg 240  Q
    ||||||||||||||||||||||||||||||    
T  12278223 atatgacaatattaacgaaacattttaacg 12278252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 19264801 - 19264720
Alignment:
Q  41 gtaacgattaatcacaatagtttttaatgtatcaaaaatttaaaataggatgagattgtacactatattagtcaaaatagtc 122  Q
    ||||||| || |||||||||| | ||||||||| ||| ||||||||||  |  |||| | |||||| |||||||||||||||    
T  19264801 gtaacgagtagtcacaatagtctctaatgtatcgaaattttaaaatagtctctgattatgcactatgttagtcaaaatagtc 19264720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 29927652 - 29927713
Alignment:
Q  177 taatatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaa 238  Q
    |||||||||||||| |||   |||||||||||  |||||||||||| ||| |||||||||||    
T  29927652 taatatgacaataaataagtttattgaagaactaatatgacaatatcaacaaaacattttaa 29927713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 33187117 - 33187166
Alignment:
Q  109 tagtcaaaatagtctttgacattaaaatagtttctcgatgttgacaataa 158  Q
    |||||||||||||| ||||| |||||||||||  || |||||||||||||    
T  33187117 tagtcaaaatagtcattgacgttaaaatagttcttcaatgttgacaataa 33187166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 8161479 - 8161435
Alignment:
Q  108 ttagtcaaaatagtctttgacattaaaatagtttctcgatgttga 152  Q
    |||||||||||||| |||||| |||||||||||| ||| ||||||    
T  8161479 ttagtcaaaatagtttttgacgttaaaatagtttttcgttgttga 8161435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 179 - 302
Target Start/End: Original strand, 8170892 - 8171015
Alignment:
Q  179 atatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagat 278  Q
    ||||||||||||||||  ||||||||| ||  ||||||||||||||| ||||||||||||    |||||||||||||| | |  || |||| |||||||     
T  8170892 atatgacaataagtaagtatattgaagtactaatatgacaatattaatgaaacattttaatattagagattattttgactaacgaattgcaaaatcagag 8170991  T
Q  279 actattttaagattttgatacatt 302  Q
    |||||||| | ||||| |||||||    
T  8170992 actattttgaaatttttatacatt 8171015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 195
Target Start/End: Complemental strand, 51226133 - 51226032
Alignment:
Q  94 gattgtacactatattagtcaaaatagtctttgacattaaaatagtttctcgatgttgacaataagctttttcttatagtgaataatatgacaataagta 193  Q
    |||||| |||| | ||||||||||||||  ||||  ||||||||||| ||| ||||| |||||||   ||||||||||  || |||||||||||||||||    
T  51226133 gattgtgcactctgttagtcaaaatagttattgaagttaaaatagttcctcaatgtttacaataactcttttcttataaggattaatatgacaataagta 51226034  T
Q  194 aa 195  Q
    ||    
T  51226033 aa 51226032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 302
Target Start/End: Original strand, 17381483 - 17381604
Alignment:
Q  181 atgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatac 280  Q
    |||| |||||||||  ||||||||| ||  |||||||||||||||||||| |||||||    |  || |||||||||| | |||||||| ||||||  ||    
T  17381483 atgataataagtaagtatattgaaggactaatatgacaatattaacgaaatattttaatatcaaggactattttgattaacaaagtgcacaatcagggac 17381582  T
Q  281 tattttaagattttgatacatt 302  Q
    ||||||   |||||||||||||    
T  17381583 tattttggaattttgatacatt 17381604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 35255464 - 35255517
Alignment:
Q  249 tattttgattgataaagtgcataatcagatactattttaagattttgatacatt 302  Q
    |||||||| | |||||||||| |||||||||||||||||| ||||| |||||||    
T  35255464 tattttgactaataaagtgcaaaatcagatactattttaaaattttaatacatt 35255517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 298
Target Start/End: Complemental strand, 13834499 - 13834383
Alignment:
Q  182 tgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatact 281  Q
    |||||||||||||  ||||||||| ||  |||||||||||||||| ||  ||||||| |  | ||| |||||||| | | |||||||| |||||   |||    
T  13834499 tgacaataagtaagtatattgaaggactaatatgacaatattaacaaattattttaatgttaaagactattttgactaacaaagtgcacaatcaaggact 13834400  T
Q  282 attttaagattttgata 298  Q
    ||||||| |||||||||    
T  13834399 attttaaaattttgata 13834383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 48973334 - 48973394
Alignment:
Q  179 atatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaac 239  Q
    ||||||||||||||||  ||||||||| ||  ||||||||||||||| ||| |||||||||    
T  48973334 atatgacaataagtaagtatattgaaggactaatatgacaatattaatgaagcattttaac 48973394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 51151012 - 51150892
Alignment:
Q  182 tgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatact 281  Q
    |||||||||||||  ||||||||| ||  |||||||||||||||| ||| ||||||| |  || || |||||| | | | ||| |||| |||||   |||    
T  51151012 tgacaataagtaagtatattgaagtactaatatgacaatattaacaaaatattttaatgttagggactattttcactaacaaaatgcacaatcacgaact 51150913  T
Q  282 attttaagattttgatacatt 302  Q
    ||||||| |||||||||||||    
T  51150912 attttaaaattttgatacatt 51150892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 8755927 - 8756018
Alignment:
Q  211 atatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatactattttaagattttgatacatt 302  Q
    |||||||||||||||||||  ||||||| |  ||||| |||||||||| |  |||||||||||||   | |||||||| |||||| ||||||    
T  8755927 atatgacaatattaacgaagtattttaatgttagagactattttgattaacgaagtgcataatcaatgattattttaaaattttgttacatt 8756018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 46804807 - 46804870
Alignment:
Q  66 aatgtatcaaaaatttaaaataggatgagattgtacactatattagtcaaaatagtctttgaca 129  Q
    |||||||||||| ||||||||||  |  ||||||||||| | |||||||||||||||| |||||    
T  46804807 aatgtatcaaaattttaaaatagtctctgattgtacactttgttagtcaaaatagtctctgaca 46804870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 256
Target Start/End: Original strand, 24806656 - 24806738
Alignment:
Q  174 gaataatatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattattttga 256  Q
    |||||||||||||||||||||  |||||||| |||   ||||||||||||||| ||  ||||||| |  ||||| ||||||||    
T  24806656 gaataatatgacaataagtaagtatattgaaaaactactatgacaatattaacaaattattttaatgttagagactattttga 24806738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 4161832 - 4161873
Alignment:
Q  197 atattgaagaacacatatgacaatattaacgaaacattttaa 238  Q
    ||||||||||||  ||||||||||||||| ||||||||||||    
T  4161832 atattgaagaactaatatgacaatattaatgaaacattttaa 4161873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 35763169 - 35763096
Alignment:
Q  243 agagattattttgattgataaagtgcataatcagatactattttaagattttgatacattcaataattattgtg 316  Q
    ||||| |||||||||| | ||||||||||||| |||||||||||   |||||||||| ||| || | |||||||    
T  35763169 agagactattttgattaacaaagtgcataatccgatactatttttgaattttgatacgttcgatgactattgtg 35763096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 39331010 - 39330961
Alignment:
Q  249 tattttgattgataaagtgcataatcagatactattttaagattttgata 298  Q
    |||||| ||| | |||||||||| |||||||||||||||| |||||||||    
T  39331010 tattttaattaacaaagtgcatagtcagatactattttaaaattttgata 39330961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 313
Target Start/End: Original strand, 52700955 - 52701056
Alignment:
Q  212 tatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatactattttaagattttgatacattcaataatta 311  Q
    ||||||||||||||  ||||||||||||  || ||| |||||||||| |  ||||||| || || | |||||||||| |||| |||||| | || |||||    
T  52700955 tatgacaatattaataaaacattttaacatgaaagactattttgattaaagaagtgcacaaacatagactattttaaaatttagatacagttaagaatta 52701054  T
Q  312 tt 313  Q
    ||    
T  52701055 tt 52701056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 924831 - 924867
Alignment:
Q  266 tgcataatcagatactattttaagattttgatacatt 302  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  924831 tgcataatcagatactattttaaaattttgctacatt 924867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 21241843 - 21241775
Alignment:
Q  67 atgtatcaaaaatttaaaataggatgagattgtacactatattagtcaaaatagtctttgacattaaaa 135  Q
    ||||||||||| ||||||||||  |  |||||| ||||  |||| |||||||| |||||||||||||||    
T  21241843 atgtatcaaaattttaaaatagttttcgattgtgcacttcattaatcaaaataatctttgacattaaaa 21241775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 21241787 - 21241843
Alignment:
Q  245 agattattttgattgataaagtgcataatcagatactattttaagattttgatacat 301  Q
    |||||||||||||| || ||||||| ||||  | |||||||||| ||||||||||||    
T  21241787 agattattttgattaatgaagtgcacaatcgaaaactattttaaaattttgatacat 21241843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 56095112 - 56095072
Alignment:
Q  262 aaagtgcataatcagatactattttaagattttgatacatt 302  Q
    |||||| ||||||| |||||||||||| |||||||||||||    
T  56095112 aaagtgaataatcaaatactattttaaaattttgatacatt 56095072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 269
Target Start/End: Original strand, 53705891 - 53705973
Alignment:
Q  187 ataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgca 269  Q
    ||||||||  |||||||| |||  |||||||||||||||| ||  ||||||| ||||||||||||||||| ||| ||||||||    
T  53705891 ataagtaagtatattgaataactaatatgacaatattaacaaagtattttaatgcgagagattattttgactgacaaagtgca 53705973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 298
Target Start/End: Original strand, 34979107 - 34979226
Alignment:
Q  179 atatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagat 278  Q
    ||||||||||||||||  ||||||||  ||  |||||| ||||||||||||| ||||||| | |||||| |||||||| | | ||| |||| ||| | |     
T  34979107 atatgacaataagtaagtatattgaatgactaatatgataatattaacgaaatattttaatgtgagagactattttgactaacaaaatgcacaattaaaa 34979206  T
Q  279 actattttaagattttgata 298  Q
    |||||||||| |||| ||||    
T  34979207 actattttaaaatttcgata 34979226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 300
Target Start/End: Original strand, 34294106 - 34294157
Alignment:
Q  249 tattttgattgataaagtgcataatcagatactattttaagattttgataca 300  Q
    |||||||| | | |||||||| ||||| ||||||||||||||||||||||||    
T  34294106 tattttgactaacaaagtgcacaatcatatactattttaagattttgataca 34294157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 302
Target Start/End: Complemental strand, 45681265 - 45681174
Alignment:
Q  211 atatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatactattttaagattttgatacatt 302  Q
    |||||| |||||||| |||||||||||||   ||||| |||||||||| ||| || ||| |||||   |||||||| | |||||||||||||    
T  45681265 atatgataatattaaagaaacattttaacataagagactattttgattaatatagcgcacaatcaaggactattttgaaattttgatacatt 45681174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 40619244 - 40619182
Alignment:
Q  66 aatgtatcaaaaatttaaaataggatgagattgtacactatattagtcaaaatagtctttgac 128  Q
    |||||||||||| ||||||||||  |  |||||| |||||| ||| |||||||||||||||||    
T  40619244 aatgtatcaaaattttaaaatagtctctgattgtgcactatgttattcaaaatagtctttgac 40619182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 50271560 - 50271494
Alignment:
Q  187 ataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattattt 253  Q
    ||||||||  ||||||||||||  ||| |||||||||||| ||| |||||||||  |||||||||||    
T  50271560 ataagtaagtatattgaagaactgataagacaatattaaccaaatattttaacgtcagagattattt 50271494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 48048014 - 48048058
Alignment:
Q  212 tatgacaatattaacgaaacattttaacgcgagagattattttga 256  Q
    ||||||| ||||||| ||||||||||||||||| || ||||||||    
T  48048014 tatgacagtattaacaaaacattttaacgcgagggactattttga 48048058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 258
Target Start/End: Complemental strand, 54630928 - 54630832
Alignment:
Q  162 ttttcttatagtgaataatatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattattttgatt 258  Q
    |||| ||||| | ||||||||| ||||||||||  |||||||||||   ||||||   |||||| ||||  |||||| |||||||| ||||||||||    
T  54630928 tttttttataataaataatatgtcaataagtaagtatattgaagaattgatatgatcgtattaaagaaattttttaatgcgagagactattttgatt 54630832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 39330126 - 39330191
Alignment:
Q  175 aataatatgacaataagtaaag-atattgaagaacacatatgacaatattaacgaaacattttaac 239  Q
    |||||||||||||||||||||  ||||||||||||  ||||||||||||||| |||||| ||||||    
T  39330126 aataatatgacaataagtaaaatatattgaagaactaatatgacaatattaatgaaacagtttaac 39330191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 6541179 - 6541120
Alignment:
Q  179 atatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaa 238  Q
    ||||||||||||||||  ||||||||| ||  |||||||||||||||||||| |||||||    
T  6541179 atatgacaataagtaagtatattgaaggactaatatgacaatattaacgaaatattttaa 6541120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 190
Target Start/End: Complemental strand, 6728021 - 6727926
Alignment:
Q  95 attgtacactatattagtcaaaatagtctttgacattaaaatagtttctcgatgttgacaataagctttttcttatagtgaataatatgacaataa 190  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||||   || ||||||||| |||   ||||||||||  || | ||||||||||||    
T  6728021 attgtgcactatgttagtcaaaatagtctttgactttaaaatagtgcttcaatgttgacactaactcttttcttataaggactgatatgacaataa 6727926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 302
Target Start/End: Complemental strand, 30519172 - 30519090
Alignment:
Q  220 tattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatactattttaagattttgatacatt 302  Q
    |||||||  ||||||||||||||||||| ||||||||   |||||||| | ||||||| |||||||| | |||| ||||||||    
T  30519172 tattaacagaacattttaacgcgagagactattttgacatataaagtgtacaatcagagactattttgaaatttcgatacatt 30519090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 34826993 - 34827053
Alignment:
Q  179 atatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaac 239  Q
    |||||||||||| |||  ||||||||  ||  |||||||||||||||||||||||||||||    
T  34826993 atatgacaataaataagtatattgaatgactaatatgacaatattaacgaaacattttaac 34827053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 52362008 - 52361952
Alignment:
Q  246 gattattttgattgataaagtgcataatcagatactattttaagattttgatacatt 302  Q
    ||||||||||| | |||||||||| ||||||| |||||||||| ||||| |||||||    
T  52362008 gattattttgaataataaagtgcaaaatcagagactattttaaaattttaatacatt 52361952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 30050557 - 30050648
Alignment:
Q  211 atatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatactattttaagattttgatacatt 302  Q
    ||||| |||||||||||| | ||||||| | |||||| |||||||| | | ||| |||||||||| | |||||||| | |||| ||||||||    
T  30050557 atatgtcaatattaacgagatattttaatgtgagagactattttgactaacaaattgcataatcatagactattttgaaatttcgatacatt 30050648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 241
Target Start/End: Complemental strand, 12238464 - 12238434
Alignment:
Q  211 atatgacaatattaacgaaacattttaacgc 241  Q
    |||||||||||||||||||||||||||||||    
T  12238464 atatgacaatattaacgaaacattttaacgc 12238434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 27900669 - 27900742
Alignment:
Q  64 ttaatgtatcaaaaatttaaaataggatgagattgtacactatattagtcaaaatagtctttgacattaaaata 137  Q
    |||||||||||||| ||||||||||     |||||| |||| || ||||||||||||||||||||  |||||||    
T  27900669 ttaatgtatcaaaattttaaaatagtccctgattgtgcactctaatagtcaaaatagtctttgacgctaaaata 27900742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 29795318 - 29795257
Alignment:
Q  62 ttttaatgtatcaaaaatttaaaataggatgagattgtacactatattagtcaaaatagtct 123  Q
    ||||||| |||||||| |||||||||| ||  |||||| |||||| ||| ||||||||||||    
T  29795318 ttttaatatatcaaaattttaaaatagtatttgattgtgcactatgttaatcaaaatagtct 29795257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 302
Target Start/End: Complemental strand, 2999047 - 2998931
Alignment:
Q  186 aataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatactattt 285  Q
    |||||||||| |||| || ||||  |||| | | ||||||| ||| |||||||  ||||| | |||||||||| |||||||| | ||| |   |||||||    
T  2999047 aataagtaaatatatagacgaactgatataaaagtattaacaaaatattttaatacgagaaactattttgattaataaagtgtacaattatgaactattt 2998948  T
Q  286 taagattttgatacatt 302  Q
    ||| |||||||||||||    
T  2998947 taaaattttgatacatt 2998931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 302
Target Start/End: Complemental strand, 89152 - 89061
Alignment:
Q  211 atatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatactattttaagattttgatacatt 302  Q
    ||||||||||||| || ||| |||||||| |||||||||||||||| | ||||||| || |||||   |||||||||  |||| ||||||||    
T  89152 atatgacaatattgacaaaatattttaacacgagagattattttgactaataaagttcacaatcacggactattttacaatttcgatacatt 89061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 104463 - 104381
Alignment:
Q  224 aacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatactattttaagattttgatacattcaat 306  Q
    ||||||| |||||||||||||||| |||||||| | ||| ||| || |||||   |||||||||  ||||| |||||||||||    
T  104463 aacgaaatattttaacgcgagagactattttgactaatacagttcacaatcaaggactattttagaattttaatacattcaat 104381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 109150 - 109086
Alignment:
Q  211 atatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatca 275  Q
    ||||||||||||| |||||| ||||| |||||||| | |||||||| | ||||||| || |||||    
T  109150 atatgacaatattgacgaaatatttttacgcgagaaactattttgactaataaagttcacaatca 109086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 109277 - 109222
Alignment:
Q  115 aaatagtctttgacattaaaatagtttctcgatgttgacaataagctttttcttata 171  Q
    ||||||||  |||| ||||||||||  ||||||||||||||||| ||||||||||||    
T  109277 aaatagtcactgacgttaaaatagtccctcgatgttgacaataa-ctttttcttata 109222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 21600575 - 21600517
Alignment:
Q  181 atgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaac 239  Q
    ||||||||||||||  ||||||||| ||| ||||||||||||||| |||| ||||||||    
T  21600575 atgacaataagtaagtatattgaaggacaaatatgacaatattaatgaaatattttaac 21600517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 16338265 - 16338325
Alignment:
Q  179 atatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaac 239  Q
    ||||||||||||||||  ||||||| | ||| |||||||||||||||| || |||||||||    
T  16338265 atatgacaataagtaagtatattgatggacaaatatgacaatattaacaaagcattttaac 16338325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 313
Target Start/End: Complemental strand, 8491396 - 8491345
Alignment:
Q  262 aaagtgcataatcagatactattttaagattttgatacattcaataattatt 313  Q
    |||||| ||||||| |||||||||||| ||||||||||||| || |||||||    
T  8491396 aaagtgaataatcaaatactattttaaaattttgatacattaaaaaattatt 8491345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 316
Target Start/End: Original strand, 9598056 - 9598139
Alignment:
Q  233 ttttaacgcgagagattattttgattgataaagtgcataatcagatactattttaagattttgatacattcaataattattgtg 316  Q
    ||||||||  ||||| |||||||||| || ||||||||||||| | | ||||||||||||| ||| |||| ||  |||||||||    
T  9598056 ttttaacgttagagactattttgattaatgaagtgcataatcaaaaattattttaagatttcgatgcattaaaggattattgtg 9598139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 302
Target Start/End: Complemental strand, 34281477 - 34281386
Alignment:
Q  211 atatgacaatattaacgaaacattttaacgcgagagattattttgattgataaagtgcataatcagatactattttaagattttgatacatt 302  Q
    |||||||||||||| | | |||||||| ||  |||||||||||||| | | | ||||||||||||   |||||||||| |||||| ||||||    
T  34281477 atatgacaatattagcaagacattttagcgtaagagattattttgactaacatagtgcataatcaaggactattttaaaattttggtacatt 34281386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 1249211 - 1249285
Alignment:
Q  182 tgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaacgcgagagattattttga 256  Q
    |||||||||||||| ||||||||| ||  |||||||| ||||||| ||| ||||||| |  | ||||||||||||    
T  1249211 tgacaataagtaaatatattgaagtactgatatgacagtattaacaaaatattttaatgttatagattattttga 1249285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 171
Target Start/End: Complemental strand, 8982343 - 8982217
Alignment:
Q  46 gattaatcacaatagttttta-atgtatcaaaaatttaaaataggatgagattgtacactatattagtcaaaatagtctttgacattaaaatagtttctc 144  Q
    ||||| |||||||||||| |  ||||||||||| |||||||||   |  |||||| || || |||||| |||| ||||||  |  |||||||||||| |     
T  8982343 gattagtcacaatagtttctcgatgtatcaaaattttaaaatattctatgattgtgcattacattagtgaaaaaagtcttcaatgttaaaatagtttgtt 8982244  T
Q  145 gatgttgacaataagctttttcttata 171  Q
    ||||||||||||||  |||||||||||    
T  8982243 gatgttgacaataacttttttcttata 8982217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 2987222 - 2987177
Alignment:
Q  43 aacgattaatcacaatagtttttaatgtatcaaaaatttaaaatag 88  Q
    |||||||| ||||||||||| | |||||||||||| ||||||||||    
T  2987222 aacgattagtcacaatagttctcaatgtatcaaaattttaaaatag 2987177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 10708439 - 10708472
Alignment:
Q  108 ttagtcaaaatagtctttgacattaaaatagttt 141  Q
    ||||||||||||||||||||| ||||||||||||    
T  10708439 ttagtcaaaatagtctttgacgttaaaatagttt 10708472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 21145512 - 21145467
Alignment:
Q  211 atatgacaatattaacgaaacattttaacgcgagagattattttga 256  Q
    |||||| |||||||||||||||||||||||  ||||| ||||||||    
T  21145512 atatgataatattaacgaaacattttaacgtaagagactattttga 21145467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 26018766 - 26018734
Alignment:
Q  108 ttagtcaaaatagtctttgacattaaaatagtt 140  Q
    |||||||||||||||| ||||||||||||||||    
T  26018766 ttagtcaaaatagtctatgacattaaaatagtt 26018734  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 349125 - 349186
Alignment:
Q  177 taatatgacaataagtaaagatattgaagaacacatatgacaatattaacgaaacattttaa 238  Q
    |||||||||||||| |||   |||||||||||  | |||||||||||||||||| |||||||    
T  349125 taatatgacaataactaagtctattgaagaactaacatgacaatattaacgaaatattttaa 349186  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 8062884 - 8062924
Alignment:
Q  262 aaagtgcataatcagatactattttaagattttgatacatt 302  Q
    |||||||| |||||||||||||||||| ||||| |||||||    
T  8062884 aaagtgcaaaatcagatactattttaaaattttaatacatt 8062924  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 239
Target Start/End: Complemental strand, 29778740 - 29778712
Alignment:
Q  211 atatgacaatattaacgaaacattttaac 239  Q
    |||||||||||||||||||||||||||||    
T  29778740 atatgacaatattaacgaaacattttaac 29778712  T

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