View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1370_low_30 (Length: 415)

Name: NF1370_low_30
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1370_low_30
NF1370_low_30
[»] chr4 (3 HSPs)
chr4 (268-411)||(26474891-26475034)
chr4 (89-213)||(26475090-26475214)
chr4 (89-212)||(32057380-32057504)
[»] chr3 (5 HSPs)
chr3 (89-210)||(12220921-12221042)
chr3 (97-212)||(7424639-7424752)
chr3 (272-338)||(12220793-12220859)
chr3 (272-344)||(7424812-7424884)
chr3 (125-212)||(24991712-24991799)
[»] scaffold0036 (4 HSPs)
scaffold0036 (98-213)||(64001-64115)
scaffold0036 (272-395)||(64166-64290)
scaffold0036 (98-213)||(69143-69257)
scaffold0036 (272-395)||(69308-69432)
[»] chr2 (2 HSPs)
chr2 (98-200)||(8520630-8520733)
chr2 (159-212)||(37831213-37831266)
[»] chr1 (5 HSPs)
chr1 (98-212)||(2660548-2660664)
chr1 (98-197)||(8133643-8133744)
chr1 (99-209)||(30655812-30655922)
chr1 (99-212)||(46167684-46167797)
chr1 (156-199)||(15840700-15840744)
[»] chr7 (1 HSPs)
chr7 (125-212)||(28006847-28006936)
[»] scaffold0236 (1 HSPs)
scaffold0236 (125-212)||(10139-10226)
[»] chr8 (1 HSPs)
chr8 (125-212)||(15075037-15075126)
[»] scaffold0171 (1 HSPs)
scaffold0171 (89-144)||(29185-29240)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 268 - 411
Target Start/End: Complemental strand, 26475034 - 26474891
Alignment:
Q  268 tcgtcttctcatcaccacaaacaacacctcacctcatcaccccaacttagtcgaaattctgaaccaattcaacttccaccaccgatcaatcctcagtctg 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  26475034 tcgtcttctcatcaccacaaacaacacctcacctcatcaccccaacttagccgaaattctgaaccaattcaacttccaccaccgatcaatcctcagtcta 26474935  T
Q  368 tagaagaagacacaaaaacacgccaaaacagcttgagataagaa 411  Q
    || || || ||||||||||||||||||||||||||||| |||||    
T  26474934 taaaaaaaaacacaaaaacacgccaaaacagcttgagacaagaa 26474891  T

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Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 26475214 - 26475090
Alignment:
Q  89 atcatcacgaaaaccaagctaaacccctacaaactaaacataaaccaaaagttgagtcaaactcacactccatcgtgaatggccacagaaacaaaatcca 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  26475214 atcatcacgaaaaccaagctaaacccctacaaactaaacataaaccaaaagttgagtcaaactcacactccatcgtgaatggccatagaatcaaaatcca 26475115  T
Q  189 aacacctatcgcctgctactcacat 213  Q
    ||||||||||||||| || ||||||    
T  26475114 aacacctatcgcctgatattcacat 26475090  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 32057504 - 32057380
Alignment:
Q  89 atcatcacgaaaaccaagctaaacccctacaaactaaacataaaccaaaagttgagtcaaa--ctcacactccatcgtgaatggccacagaaacaaaatc 186  Q
    |||| ||| ||||| ||| |||||||| |||||| ||||||||||||||||||||| ||||  |||||||||||||||||||| | ||  ||| |||||     
T  32057504 atcaacaccaaaactaagttaaaccccaacaaac-aaacataaaccaaaagttgaggcaaaacctcacactccatcgtgaatgacaacgaaaataaaatt 32057406  T
Q  187 caaacacctatcgcctgctactcaca 212  Q
    |||||| |||| |||  |||||||||    
T  32057405 caaacaactattgcccactactcaca 32057380  T

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Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 12221042 - 12220921
Alignment:
Q  89 atcatcacgaaaaccaagctaaacccctacaaactaaacataaaccaaaagttgagtcaaactcacactccatcgtgaatggccacagaaacaaaatcca 188  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||| ||||| ||||||||||||    
T  12221042 atcaacaccaaaaccaagctaaacccctacaaactaaacataaaccaaaagttgagtcaagctcacaatccatcttgaatgaccacaaaaacaaaatcca 12220943  T
Q  189 aacacctatcgcctgctactca 210  Q
    ||||| ||||| ||||||||||    
T  12220942 aacacatatcgtctgctactca 12220921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 7424639 - 7424752
Alignment:
Q  97 gaaaaccaagctaaacccctacaaactaaacataaaccaaaagttgagtcaaactcacactccatcgtgaatggccacagaaacaaaatccaaacaccta 196  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||| ||||||| ||||| |||| |||||||||||||||    
T  7424639 gaaaaccaagctaaaccc-tacaaactaatcataaaccaaaagttgagtcaagctcacactccatagtgaatgaccacaaaaac-aaatccaaacaccta 7424736  T
Q  197 tcgcctgctactcaca 212  Q
    ||| ||||||||||||    
T  7424737 tcgtctgctactcaca 7424752  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 12220859 - 12220793
Alignment:
Q  272 cttctcatcaccacaaacaacacctcacctcatcaccccaacttagtcgaaattctgaaccaattca 338  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||    
T  12220859 cttctcatcaccacaaacaacacctcacctcatcaccacaacttagccgaaactccgaaccaattca 12220793  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 272 - 344
Target Start/End: Original strand, 7424812 - 7424884
Alignment:
Q  272 cttctcatcaccacaaacaacacctcacctcatcaccccaacttagtcgaaattctgaaccaattcaacttcc 344  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||| ||| |||||    
T  7424812 cttctcatcaccacaaacaacacctcacatcatcaccacaacttagccgaaattccgaaccaaatcagcttcc 7424884  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 24991712 - 24991799
Alignment:
Q  125 aacataaaccaaaagttgagtcaaactcacactccatcgtgaatggccacagaaacaaaatccaaacacctatcgcctgctactcaca 212  Q
    ||||||||||||||||||    ||  |||| ||||| ||||||||| |||| |||||||||||||| |||||||| | ||| ||||||    
T  24991712 aacataaaccaaaagttgccaaaacatcaccctccaacgtgaatgggcacaaaaacaaaatccaaatacctatcgtccgcttctcaca 24991799  T

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Target: scaffold0036 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 64001 - 64115
Alignment:
Q  98 aaaaccaagctaaacccctacaaactaaacataaaccaaaagttgagtcaaactcacactccatcgtgaatggccacagaaacaaaatccaaacacctat 197  Q
    ||||||||||||||||| || |||| || |||||||||||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||| |||||    
T  64001 aaaaccaagctaaaccc-tataaaccaa-cataaaccaaaagttgagtcaagcacacactccatcgcgaatgaccacagaaacaaaatccaaacgcctat 64098  T
Q  198 cgc-ctgctactcacat 213  Q
    ||| | |||||||||||    
T  64099 cgcgcggctactcacat 64115  T

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Target: scaffold0036; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 272 - 395
Target Start/End: Original strand, 64166 - 64290
Alignment:
Q  272 cttctcatcaccacaaaca-acacctcacctcatcaccccaacttagtcgaaattctgaaccaattcaacttccaccaccgatcaatcctcagtctgtag 370  Q
    ||||||||||||||||||| |||||||||||||||||| |||| ||| |||| ||| |||| ||||||  |||||||||||||||||||||||||||| |    
T  64166 cttctcatcaccacaaacagacacctcacctcatcaccacaacatagccgaatttccgaactaattcagattccaccaccgatcaatcctcagtctgtcg 64265  T
Q  371 aagaagacacaaaaacacgccaaaa 395  Q
     ||||||| | |||| |||| ||||    
T  64266 gagaagacgccaaaatacgcaaaaa 64290  T

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Target: scaffold0036; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 69143 - 69257
Alignment:
Q  98 aaaaccaagctaaacccctacaaactaaacataaaccaaaagttgagtcaaactcacactccatcgtgaatggccacagaaacaaaatccaaacacctat 197  Q
    ||||||||||||||||| || |||| || |||||||||||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||| |||||    
T  69143 aaaaccaagctaaaccc-tataaaccaa-cataaaccaaaagttgagtcaagcacacactccatcgcgaatgaccacagaaacaaaatccaaacgcctat 69240  T
Q  198 cgc-ctgctactcacat 213  Q
    ||| | |||||||||||    
T  69241 cgcgcggctactcacat 69257  T

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Target: scaffold0036; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 272 - 395
Target Start/End: Original strand, 69308 - 69432
Alignment:
Q  272 cttctcatcaccacaaaca-acacctcacctcatcaccccaacttagtcgaaattctgaaccaattcaacttccaccaccgatcaatcctcagtctgtag 370  Q
    ||||||||||||||||||| |||||||||||||||||| |||| ||| |||| ||| |||| ||||||  |||||||||||||||||||||||||||| |    
T  69308 cttctcatcaccacaaacagacacctcacctcatcaccacaacatagccgaatttccgaactaattcagattccaccaccgatcaatcctcagtctgtcg 69407  T
Q  371 aagaagacacaaaaacacgccaaaa 395  Q
     ||||||| | |||| |||| ||||    
T  69408 gagaagacgccaaaatacgcaaaaa 69432  T

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Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 8520733 - 8520630
Alignment:
Q  98 aaaaccaagctaaacccctacaaactaaacataaaccaaaagttgagtcaaa-ctca-cactccatcgtgaatggccacagaaacaaaatccaaacacct 195  Q
    ||||||||||||||||||  |||| | ||||||||| ||||||||||  ||| |||| | |||||||||||||||||||| |||||||||||||||||||    
T  8520733 aaaaccaagctaaaccccctcaaa-tcaacataaactaaaagttgagcaaaaactcatccctccatcgtgaatggccacataaacaaaatccaaacacct 8520635  T
Q  196 atcgc 200  Q
    |||||    
T  8520634 atcgc 8520630  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 37831266 - 37831213
Alignment:
Q  159 catcgtgaatggccacagaaacaaaatccaaacacctatcgcctgctactcaca 212  Q
    ||||| |||||||||||  ||||||||| | |||||||||||||||||||||||    
T  37831266 catcgcgaatggccacaagaacaaaatctacacacctatcgcctgctactcaca 37831213  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 2660548 - 2660664
Alignment:
Q  98 aaaaccaagctaaacccctacaaactaaacataaaccaaaagttgagtcaaact--cacactccatcgtgaatggccacagaaacaaaatccaaacacct 195  Q
    |||| |||||||| |||| |||||   |||||||||||||||||| | |||| |  |||||||||| ||||| ||||||| |||||||||||||||||      
T  2660548 aaaatcaagctaatcccccacaaaaccaacataaaccaaaagttgcgccaaaatttcacactccattgtgaagggccacataaacaaaatccaaacactc 2660647  T
Q  196 atcgcctgctactcaca 212  Q
    ||| ||| |||||||||    
T  2660648 atcacctactactcaca 2660664  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 8133744 - 8133643
Alignment:
Q  98 aaaaccaagctaaacccctacaaactaaacataaaccaaaagttgagtcaaa--ctcaca-ctccatcgtgaatggccacagaaacaaaatccaaacacc 194  Q
    ||||||||| ||| |||| |||||| || |||||||||||||||||| ||||  |||||| || |||| |||||||||||| ||||||||| ||||||||    
T  8133744 aaaaccaagttaagcccccacaaaccaa-cataaaccaaaagttgagccaaaacctcacaacttcatcatgaatggccacaaaaacaaaattcaaacacc 8133646  T
Q  195 tat 197  Q
    |||    
T  8133645 tat 8133643  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 209
Target Start/End: Complemental strand, 30655922 - 30655812
Alignment:
Q  99 aaaccaagctaaacccctacaaactaaacataaaccaaaagttgagtcaaa--ctcacactccatcgtgaatggccacagaaacaaaatccaaacaccta 196  Q
    ||||||||||||||||||||||| | ||||||  | | |||||||| ||||  |||||  ||||| | |||||||||  ||||||||||||| |||||||    
T  30655922 aaaccaagctaaacccctacaaa-tcaacatagtc-agaagttgagccaaaacctcaccgtccattgggaatggccatggaaacaaaatccatacaccta 30655825  T
Q  197 tcgcctgctactc 209  Q
    |||| ||||||||    
T  30655824 tcgcttgctactc 30655812  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 212
Target Start/End: Complemental strand, 46167797 - 46167684
Alignment:
Q  99 aaaccaagctaaacccctacaaactaaacataaaccaaaagttgagtcaaa--ctcacactccatcgtgaatggccacagaaacaaaatccaaacaccta 196  Q
    |||||||| ||||| || |||||   ||||||||||||||||||| |||||  || |||||||||||| |||| ||||  ||||||||  ||||||||||    
T  46167797 aaaccaagataaacacccacaaaaccaacataaaccaaaagttgattcaaaaccttacactccatcgtaaatgaccac--aaacaaaaatcaaacaccta 46167700  T
Q  197 tcgcctgctactcaca 212  Q
    ||| || || ||||||    
T  46167699 tcgactacttctcaca 46167684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 15840700 - 15840744
Alignment:
Q  156 ctccatcgtgaatggccacag-aaacaaaatccaaacacctatcg 199  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||    
T  15840700 ctccatcgtgaatggccacagaaaacaaaatccaaacatctatcg 15840744  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 28006936 - 28006847
Alignment:
Q  125 aacataaaccaaaagttgagtcaaa--ctcacactccatcgtgaatggccacagaaacaaaatccaaacacctatcgcctgctactcaca 212  Q
    ||||||||||||||  |||| ||||  || ||||||| || |||||||||||| ||||||||| |||||||||||| || ||||||||||    
T  28006936 aacataaaccaaaatgtgagccaaaaccttacactccctcatgaatggccacataaacaaaattcaaacacctatcacccgctactcaca 28006847  T

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Target: scaffold0236 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 10139 - 10226
Alignment:
Q  125 aacataaaccaaaagttgagtcaaactcacactccatcgtgaatggccacagaaacaaaatccaaacacctatcgcctgctactcaca 212  Q
    |||||||| |||||||||||  ||| || ||| | | ||||||||| |||| |||||||||||||||| || |||||  |||||||||    
T  10139 aacataaatcaaaagttgagctaaaatctcacccaaccgtgaatgggcacataaacaaaatccaaacatctgtcgcccactactcaca 10226  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 15075037 - 15075126
Alignment:
Q  125 aacataaaccaaaagttgagtcaaa--ctcacactccatcgtgaatggccacagaaacaaaatccaaacacctatcgcctgctactcaca 212  Q
    ||||||||||||||||| || ||||  || |||||| ||||| |||  ||||| ||||||||| |||||| |||||| | ||||||||||    
T  15075037 aacataaaccaaaagttcagccaaaaccttacactctatcgtaaataaccacataaacaaaattcaaacagctatcgtccgctactcaca 15075126  T

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Target: scaffold0171 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 29240 - 29185
Alignment:
Q  89 atcatcacgaaaaccaagctaaacccct-acaaactaaacataaaccaaaagttgag 144  Q
    |||| ||| ||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  29240 atcaacaccaaaaccaagctaaaccccccacaaactaa-cataaaccaaaagttgag 29185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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