View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_31 (Length: 412)
Name: NF1370_low_31
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 30 - 383
Target Start/End: Complemental strand, 52151020 - 52150664
Alignment:
| Q |
30 |
gagagttgcttctgcttcttttgctcttcctcgtctttttctctaacatacaaaactatggatat----tatgtcggtgtttattaaaacctggccaata |
125 |
Q |
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| T |
52151020 |
gagagttgcttctgcttcttttgctcttcctcgtctttttctctaacatacaaaactatggatatatattatgtcggtgtttattaaaacctggccaata |
52150921 |
T |
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| Q |
126 |
cgtacactgacctcataaattaattttgttttttcattgtccttttcaaaatttacagatatgagaaaaatattcccctctgaattgtttcacttggttg |
225 |
Q |
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| T |
52150920 |
cgtacactgacctcataaattaattttgttttttcattgtccttttcaaaatttacagatatgagaaaaatattcccctctgaattgtttcacttgggtg |
52150821 |
T |
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| Q |
226 |
gaagtgaatatacatgtcaatatgcatggttttctcctaacaattgctcactgtagtctattgtgttaaaatgagtaacaatgcctgtaaatacaataga |
325 |
Q |
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| T |
52150820 |
gaagtgaatatacatgtcaatatgcatggttttctcctaacaattgctcactctagtctattgtgttaaaatgagtaacaatgcctgtaaatacaatag- |
52150722 |
T |
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| Q |
326 |
aattataacgatcgtaatcaaattaaattgaaaacgtgaacctcaacatagatagtag |
383 |
Q |
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| T |
52150721 |
aattataacgatcgttatcaaattaaattgaaaacgtgaacctcaacatagaaagtag |
52150664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 52158312 - 52158228
Alignment:
| Q |
138 |
tcataaattaattttgttttttcattgtccttttcaaaatttacagatatgagaaaaatattcccctctgaattgtttcacttgg |
222 |
Q |
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| T |
52158312 |
tcattaatttatttttctttctcattgtctgtttctaaatttacagatattagaaaaatattcccctttgaactatttcacttgg |
52158228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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