View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1370_low_32 (Length: 407)
Name: NF1370_low_32
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 34 - 400
Target Start/End: Original strand, 8865277 - 8865643
Alignment:
| Q |
34 |
cgtcatatcgtcagtttcgcaaacattataaaagagaaaggaagtttggaacacaacatttaggcagaggtactgtgnnnnnnncaattttcaaagttct |
133 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8865277 |
cgtcatatcttcagtatcgcaaacattataaaagagaaaggaagttcggaacacaacatttaggcagaggtactgtgcttttttcaattttcaaagttct |
8865376 |
T |
|
| Q |
134 |
aaataaacttcttaagatcttgatggtctatacttgcagtgtgatactgaaaacttaatagtacttttctagattttataaaacgtaatagtacttgctg |
233 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8865377 |
aaataaactgcttaagatcttgatggtctattcttgctgtgtgatactgaaaacttaatagtacttttctagattttataaaacgtaatagtacttgctg |
8865476 |
T |
|
| Q |
234 |
tgttgtaacatacattttattacatattcagtataaataattttattatgtggttgtatatctttcgcttcctcattaaactattcaagctccgccgctg |
333 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8865477 |
tgttgtaacattcattttattacatatttggtataaataattttattatgtggttgtatatctttcgcttcctcattaaactattcaagctccgccgctg |
8865576 |
T |
|
| Q |
334 |
cacttttccttttcctggactcatacttgcttcttgttgtgtagtttacttgctgatgttcatctca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
8865577 |
cacttttccttttcctggactcatacttgcttcttgttgtgtaggttgcttgctgatgttcatctca |
8865643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 57 - 400
Target Start/End: Complemental strand, 11127458 - 11127114
Alignment:
| Q |
57 |
cattataaaagagaaaggaagtttggaacacaacatttaggcagaggtactgtgnnnnnnncaattttcaaagttctaaataaacttcttaagatcttga |
156 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
11127458 |
cattataaaagagaaaggaagttcggaacacaatatttatgcagaggtactgtgcttttttcaattttcaaagttctaaataaactgcttaagagcttga |
11127359 |
T |
|
| Q |
157 |
tggtctatacttgcagtgtgatactgaaaacttaatagtacttttctagattttataaaacgtaatagtacttgctgtgttgtaacatacattttattac |
256 |
Q |
| |
|
| || ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11127358 |
tagtttatacttgctgtgtgatactgaaaacttaatattacttttctagattttataaaacgtaatagtacttgctgtgttgtaacattcattttattac |
11127259 |
T |
|
| Q |
257 |
atattcagtataaataattttattatgtggttgtatatctttcgcttcctcattaaactattcaagctccgccgctgcacttttccttttcctggactca |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11127258 |
atattcagtataaataattttattatgtggttgtatatctttcgcttcatcattaaactattcaagctccgccgctgcacttttccttttcctggactca |
11127159 |
T |
|
| Q |
357 |
tacttgc-ttcttgttgtgtagtttacttgctgatgttcatctca |
400 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||||||||||||| |
|
|
| T |
11127158 |
tacttgctttcttgttgtgtaggttgcttgctgatgttcatctca |
11127114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 201 - 400
Target Start/End: Original strand, 10893057 - 10893256
Alignment:
| Q |
201 |
tctagattttataaaacgtaatagtacttgctgtgttgtaacatacattttattacatattcagtataaataattttattatgtggttgtatatctttcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10893057 |
tctagattttataaaacgtaatagtacttgctgtgttgtaacattcattttattacatattcagtataaataattttattatgtggttgtatatctttcg |
10893156 |
T |
|
| Q |
301 |
cttcctcattaaactattcaagctccgccgctgcacttttccttttcctggactcatacttgcttcttgttgtgtagtttacttgctgatgttcatctca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
10893157 |
cttcctcattaaactattcaagctccgccgctgcacttttccttttcctggactcatacttgcttcttgttgtgtaggttgcttgctgatgttcatctca |
10893256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 30 - 400
Target Start/End: Complemental strand, 11156368 - 11155989
Alignment:
| Q |
30 |
atcccgtcatatcgtcagtttcgcaaacattataaaagagaaaggaagtttggaacacaacatttaggcagaggtactgtgnnnnnnncaattttcaaag |
129 |
Q |
| |
|
||||| ||||||| |||||||||||| |||||||||||||||||||| || ||||||||||||| ||||| |||||||||| | |||||||||| |
|
|
| T |
11156368 |
atcccatcatatcttcagtttcgcaagcattataaaagagaaaggaacttcggaacacaacattgaggcataggtactgtgtttttttcgattttcaaag |
11156269 |
T |
|
| Q |
130 |
ttctaaataaacttcttaagatcttgatggtctatacttgcagtgtgatactgaaaacttaatagtacttttctagattttataaaac--------gtaa |
221 |
Q |
| |
|
||||||||||| | || |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||| | || || | |
|
|
| T |
11156268 |
ttctaaataaattgctgaagatcttgatggtctatacttgctgtgtgatactgaaaacttactagtacttttcttgattttgttggacaatctcaagtta |
11156169 |
T |
|
| Q |
222 |
tagtacttgctgtgttgtaacatacattttattacatattcagtata--aataattttattatgtggttgtatatctttcgcttcctcattaaactattc |
319 |
Q |
| |
|
||| | | |||||||||||| ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||||||| | ||| ||||| |
|
|
| T |
11156168 |
gagttcatag-gtgttgtaacattcattttattacatattcggtatataaataattttattatgcggttgtatatctttcacttcctcgtaaaattattc |
11156070 |
T |
|
| Q |
320 |
aagctccgccgctgcacttttccttttcctggactcatacttgcttcttgttgtgtagtttacttgctgatgttcatctca |
400 |
Q |
| |
|
||| ||| || |||| |||| |||||||||| |||||||||| ||||||||||| || || |||| |||||||||||||| |
|
|
| T |
11156069 |
aagttccaccactgctctttcgcttttcctggcctcatacttgtttcttgttgtgcaggttgcttgttgatgttcatctca |
11155989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 30 - 400
Target Start/End: Complemental strand, 11145194 - 11144811
Alignment:
| Q |
30 |
atcccgtcatatcgtcagtttcgcaaacattataaaagagaaaggaagtttggaacacaacatttaggcagaggtactgtgnnnnnnnca-attttcaaa |
128 |
Q |
| |
|
||||| ||||||| |||||||||||| |||||||| ||||||||| ||| ||||||||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
11145194 |
atcccatcatatcttcagtttcgcaagcattataattgagaaaggacgttcggaacacaacattgaggcagaggtactgtgtttttttcttattttcaaa |
11145095 |
T |
|
| Q |
129 |
gttctaaataaacttcttaagatcttgatggtctatacttgcagtgtgatactgaaaacttaatagtacttttctagattttata----aaacgtaa--t |
222 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| |||||| |||||||||||||| |||| |||||||||||| |||||| | || | || | |
|
|
| T |
11145094 |
gttctaaataaattgcttaagatcttgatggtctgcacttgctgtgtgatactgaaagcttattagtacttttcttgattttgttggacaatctgaagtt |
11144995 |
T |
|
| Q |
223 |
agtacttgct--gtgttgtaacatacattttattacatattcagtata--aataattttattatgtggttgtatatctttcgcttcctcattaaactatt |
318 |
Q |
| |
|
|| | || | |||||||||||| |||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||||||| | ||| |||| |
|
|
| T |
11144994 |
ag-atttcataggtgttgtaacattcattttattacatatttggtatataaataattttattatgcggttgtatatctttcacttcctcgtaaaattatt |
11144896 |
T |
|
| Q |
319 |
caagctccgccgctgcacttttccttttcctggactc---atacttgcttcttgttgtgtagtttacttgctgatgttcatctca |
400 |
Q |
| |
|
|||| |||||| |||| |||| |||||||||||||| ||||||||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
11144895 |
caagttccgccactgctctttcgcttttcctggactcataatacttgcttcttgtggtgtaggttgcttgctgatgttcatctca |
11144811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 10892942 - 10893054
Alignment:
| Q |
30 |
atcccgtcatatcgtcagtttcgcaaacattataaaagagaaaggaagtttggaacacaacatttaggcagaggtactgtgnnnnnnncaattttcaaag |
129 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10892942 |
atcccgtcatatcttcagtttcgcaaacattataaaagagaaaggaagttctcaacacaacatttaggcagaggtactgtgcttttttcaattttcaaag |
10893041 |
T |
|
| Q |
130 |
ttctaaataaact |
142 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10893042 |
ttctaaataaact |
10893054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 11193133 - 11193178
Alignment:
| Q |
165 |
acttgcagtgtgatactgaaaacttaatagtacttttctagatttt |
210 |
Q |
| |
|
|||||| |||| |||||||||||||| |||||||||||| |||||| |
|
|
| T |
11193133 |
acttgctgtgtaatactgaaaacttagtagtacttttcttgatttt |
11193178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University