View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_33 (Length: 406)
Name: NF1370_low_33
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 24 - 402
Target Start/End: Original strand, 42376585 - 42376969
Alignment:
| Q |
24 |
tcatcacatatatcttccactagtataagatatgnnnnnnnnncaaaataagcttaaaatctaaatctagttggagagtaaccaagctaaatttagtcac |
123 |
Q |
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| T |
42376585 |
tcataacatatatcttccactagtataagatatgaaaaaaaaacaaaataagcttaaaatctaaatctagttggagtgtaaccaagctaaatttagtcac |
42376684 |
T |
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| Q |
124 |
taacaaactctactaagctaaaatgatcataaataattaagggatggaaaaactttcccctaatatcaatggtcacttcaaaatccatagttctgaacac |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42376685 |
taacaaactctactaagctaaaatgatcataaataattaagggatggaaaaactttcccctaatatcaatggtcacttcaaaatccatagttctgaacac |
42376784 |
T |
|
| Q |
224 |
ggttctaaattgtggtcc------gcaactgcaactgcagtctcattacacaaatatcgattagcaaacaaatgaagctagagaatcttgaagtgcaaca |
317 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42376785 |
ggttctaaattgtggtccgcaattgcaactgcaactgcagtctcattacacaaatatcgactagcaaacaaatgaagctagagaatcttgaagtgcaaca |
42376884 |
T |
|
| Q |
318 |
cacaaaaatttctccaagtctggtgttgcgaaaaatgatcgacgaagagagaaatttgaaagcaccctttgtttctgtggtgctg |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42376885 |
cacaaaaatttctccaagtctggtgttgcgaaaaatgatcgacgaagagagaaatttgaaagcaccctttgtttctttggtgctg |
42376969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 20320899 - 20320820
Alignment:
| Q |
67 |
caaaataagcttaaaatctaaatctagttggagagtaaccaagctaaatttagtcactaacaaactctactaagctaaaa |
146 |
Q |
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|||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20320899 |
caaaatcagcttaaaatctaaatatcgttggagagtaaccaagctaaatttagtcactatcaaactctactaagctaaaa |
20320820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 34151644 - 34151565
Alignment:
| Q |
67 |
caaaataagcttaaaatctaaatctagttggagagtaaccaagctaaatttagtcactaacaaactctactaagctaaaa |
146 |
Q |
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|||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34151644 |
caaaatcagcttaaaatctaaatatcgttggagagtaaccaagctaaatttagtcactatcaaactctactaagctaaaa |
34151565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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