View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_35 (Length: 398)
Name: NF1370_low_35
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 74 - 398
Target Start/End: Original strand, 37224261 - 37224585
Alignment:
| Q |
74 |
cagagacaaggaccaagaaacagtttgaagtggaactgacattgatccacttgccattgtgaagaacttgaaggccactaactccattctggatgaggag |
173 |
Q |
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| T |
37224261 |
cagagacgaggaccaagaaacagtttgaagtggaactgacattgatccacttgccattgtgaagaacttgaaggccactaactccattctggatgaggag |
37224360 |
T |
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| Q |
174 |
gttcaagaggccatgatcggaatgtgggggcattcccattgcaagctcaggttgaggacaaggaggataaagatttgctgccaacatttgtaaaccagaa |
273 |
Q |
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| T |
37224361 |
gttcaagaggccatgatcggaatgtgggggcattcccattgcaagatcaggttgaggacaaggaggataaagatttgctgccaacatttgtaaaccagaa |
37224460 |
T |
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| Q |
274 |
tctagattcattgttttgtctatatagttgacttccaaacccaaactttctgatattcctttgagaagttctctacctaatttccatgtttttctgctgt |
373 |
Q |
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| T |
37224461 |
tctagattcattgttttgtctatatagttgacttccaaacccaaactttctgatattcctttgagaagttctctacctaatttccatgtttttctgctgt |
37224560 |
T |
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| Q |
374 |
actctgcggatgtttccctacaacc |
398 |
Q |
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| T |
37224561 |
actctgcggatgtttccctacaacc |
37224585 |
T |
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