View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1370_low_39 (Length: 389)

Name: NF1370_low_39
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1370_low_39
NF1370_low_39
[»] chr3 (6 HSPs)
chr3 (30-205)||(21125777-21125953)
chr3 (30-205)||(21118357-21118532)
chr3 (94-154)||(1185300-1185360)
chr3 (90-154)||(9283944-9284008)
chr3 (94-154)||(51280644-51280704)
chr3 (94-154)||(47173722-47173782)
[»] chr2 (5 HSPs)
chr2 (86-205)||(45297715-45297834)
chr2 (93-153)||(4680333-4680393)
chr2 (90-154)||(39502574-39502638)
chr2 (94-153)||(18180657-18180716)
chr2 (106-154)||(6981685-6981733)
[»] chr7 (2 HSPs)
chr7 (94-154)||(5781988-5782048)
chr7 (94-154)||(34960201-34960261)
[»] chr1 (2 HSPs)
chr1 (90-154)||(48714546-48714610)
chr1 (90-153)||(52629198-52629261)
[»] chr8 (1 HSPs)
chr8 (94-154)||(34928604-34928664)
[»] chr4 (3 HSPs)
chr4 (94-154)||(4428830-4428890)
chr4 (94-154)||(33800512-33800572)
chr4 (112-154)||(8494938-8494980)
[»] chr5 (2 HSPs)
chr5 (94-154)||(7692366-7692426)
chr5 (94-154)||(36602810-36602870)


Alignment Details
Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 21125777 - 21125953
Alignment:
Q  30 ttttcttccttgctaactaggatagtaaggtttcgtttgacccagcnnnnnnnagg-atataagttactttaaatttaaagttaaaaataacagcttaaa 128  Q
    |||||||| |||||||||| |||| |||||||||||||| ||||||       | | ||||||| ||||||||| |||||||||||||||||||||||||    
T  21125777 ttttcttcattgctaactaagatactaaggtttcgtttggcccagctttttttaagcatataagctactttaaacttaaagttaaaaataacagcttaaa 21125876  T
Q  129 agataaagttaaagttgtttggtaaacattgttttttattacaannnnnnnatgttaaagtgtttgataatattttc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  21125877 agataaagttaaagttgtttggtaaacattgttttttattacaatttttttatgttaaagtgtttgataatattttc 21125953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 21118357 - 21118532
Alignment:
Q  30 ttttcttccttgctaactaggatagtaaggtttcgtttgacccagcnnnnnnnagg-atataagttactttaaatttaaagttaaaaataacagcttaaa 128  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||       ||  ||||||| ||||||||| ||||||||||||||||| |||||||    
T  21118357 ttttcttccttgctaactaggatactaaggtttcgtttggcccagctttttttagacatataagctactttaaacttaaagttaaaaataactgcttaaa 21118456  T
Q  129 agataaagttaaagttgtttggtaaacattgttttttattacaannnnnnnatgttaaagtgtttgataatattttc 205  Q
    |||||||||||||||||||||||||||||| |||||||||| ||       ||||||||||||||||||||||||||    
T  21118457 agataaagttaaagttgtttggtaaacatt-ttttttattataatttttttatgttaaagtgtttgataatattttc 21118532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 1185360 - 1185300
Alignment:
Q  94 tactttaaatttaaagttaaaaataacagcttaaaagataaagttaaagttgtttggtaaa 154  Q
    ||||||||| |||||||||||||||  ||||| | | || |||||||||||||||||||||    
T  1185360 tactttaaacttaaagttaaaaatatgagctttagaaatgaagttaaagttgtttggtaaa 1185300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 9283944 - 9284008
Alignment:
Q  90 aagttactttaaatttaaagttaaaaataacagcttaaaagataaagttaaagttgtttggtaaa 154  Q
    ||||||||||||| |||||||||||||||  ||||| | | || ||||| |||||||||||||||    
T  9283944 aagttactttaaacttaaagttaaaaatatgagctttagaaattaagtttaagttgtttggtaaa 9284008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 51280644 - 51280704
Alignment:
Q  94 tactttaaatttaaagttaaaaataacagcttaaaagataaagttaaagttgtttggtaaa 154  Q
    ||||||||| |||||||||||||||  ||||| | | || |||||||||||||||||||||    
T  51280644 tactttaaacttaaagttaaaaatataagctttagaaatgaagttaaagttgtttggtaaa 51280704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 47173722 - 47173782
Alignment:
Q  94 tactttaaatttaaagttaaaaataacagcttaaaagataaagttaaagttgtttggtaaa 154  Q
    ||||||||| |||||||||||||||  ||||| | | || ||||| |||||||||||||||    
T  47173722 tactttaaacttaaagttaaaaatatgagctttagaaattaagtttaagttgtttggtaaa 47173782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 45297715 - 45297834
Alignment:
Q  86 atataagttactttaaatttaaagttaaaaataacagcttaaaagataaagttaaagttgtttggtaaacattgttttttattacaannnnnnnatgtta 185  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||    
T  45297715 atataagctactttaaacttaaagttaaaaataacagcttaaaagataaagttaaagttgtttggtaaacattgttttttatttcaatttttttatgtta 45297814  T
Q  186 aagtgtttgataatattttc 205  Q
    ||||||||||||||||||||    
T  45297815 aagtgtttgataatattttc 45297834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 4680393 - 4680333
Alignment:
Q  93 ttactttaaatttaaagttaaaaataacagcttaaaagataaagttaaagttgtttggtaa 153  Q
    |||||||||| ||||||||||||  || ||||| ||| ||||||| |||||||||||||||    
T  4680393 ttactttaaaattaaagttaaaagaaagagctttaaaaataaagtaaaagttgtttggtaa 4680333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 39502638 - 39502574
Alignment:
Q  90 aagttactttaaatttaaagttaaaaataacagcttaaaagataaagttaaagttgtttggtaaa 154  Q
    ||||||||||||| |||||||||||||||  ||||| | | || ||||| |||||||||||||||    
T  39502638 aagttactttaaacttaaagttaaaaatatgagctttagaaattaagtttaagttgtttggtaaa 39502574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 18180657 - 18180716
Alignment:
Q  94 tactttaaatttaaagttaaaaataacagcttaaaagataaagttaaagttgtttggtaa 153  Q
    |||||||||  ||||||||||| ||| ||||| | | |||||||||||||||||||||||    
T  18180657 tactttaaaaataaagttaaaactaagagctttacaaataaagttaaagttgtttggtaa 18180716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 6981685 - 6981733
Alignment:
Q  106 aaagttaaaaataacagcttaaaagataaagttaaagttgtttggtaaa 154  Q
    |||||||||| ||| ||||| | | ||||||||||||||||||||||||    
T  6981685 aaagttaaaactaagagctttacaaataaagttaaagttgtttggtaaa 6981733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 5781988 - 5782048
Alignment:
Q  94 tactttaaatttaaagttaaaaataacagcttaaaagataaagttaaagttgtttggtaaa 154  Q
    ||||||||| |||||||||||||||  ||||| ||| || |||||||||||||||||||||    
T  5781988 tactttaaacttaaagttaaaaatatgagctttaaaaatgaagttaaagttgtttggtaaa 5782048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 34960261 - 34960201
Alignment:
Q  94 tactttaaatttaaagttaaaaataacagcttaaaagataaagttaaagttgtttggtaaa 154  Q
    |||||||||||||||||||||||||  ||||| ||| || || ||||||||||||||||||    
T  34960261 tactttaaatttaaagttaaaaatatgagctttaaaaatgaaattaaagttgtttggtaaa 34960201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 48714610 - 48714546
Alignment:
Q  90 aagttactttaaatttaaagttaaaaataacagcttaaaagataaagttaaagttgtttggtaaa 154  Q
    |||||||||||||||||||||||||||||  ||||| | | || ||||| |||||||||||||||    
T  48714610 aagttactttaaatttaaagttaaaaatatgagctttagaaattaagtttaagttgtttggtaaa 48714546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 52629261 - 52629198
Alignment:
Q  90 aagttactttaaatttaaagttaaaaataacagcttaaaagataaagttaaagttgtttggtaa 153  Q
    |||||||||||||  |||||||||||  || ||||| ||| ||||||| |||||||||||||||    
T  52629261 aagttactttaaaactaaagttaaaaggaagagctttaaaaataaagtaaaagttgtttggtaa 52629198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 34928664 - 34928604
Alignment:
Q  94 tactttaaatttaaagttaaaaataacagcttaaaagataaagttaaagttgtttggtaaa 154  Q
    ||||||||| |||||||||||||||  ||||| | | || |||||||||||||||||||||    
T  34928664 tactttaaacttaaagttaaaaatatgagctttagaaatgaagttaaagttgtttggtaaa 34928604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 4428830 - 4428890
Alignment:
Q  94 tactttaaatttaaagttaaaaataacagcttaaaagataaagttaaagttgtttggtaaa 154  Q
    ||||||||| |||||||||||||||  ||||| | | || |||||||||||||||||||||    
T  4428830 tactttaaacttaaagttaaaaatatgagctttagaaatgaagttaaagttgtttggtaaa 4428890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 33800572 - 33800512
Alignment:
Q  94 tactttaaatttaaagttaaaaataacagcttaaaagataaagttaaagttgtttggtaaa 154  Q
    ||||||||| |||||||||||||||  ||||| | | || |||||||||||||||||||||    
T  33800572 tactttaaacttaaagttaaaaatatgagctttagaaatgaagttaaagttgtttggtaaa 33800512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 8494980 - 8494938
Alignment:
Q  112 aaaaataacagcttaaaagataaagttaaagttgtttggtaaa 154  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||    
T  8494980 aaaaataaaagctttaaaaataaagttaaagttgtttggtaaa 8494938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 7692366 - 7692426
Alignment:
Q  94 tactttaaatttaaagttaaaaataacagcttaaaagataaagttaaagttgtttggtaaa 154  Q
    ||||||||| |||||||||||||||  ||||| | | || ||||| |||||||||||||||    
T  7692366 tactttaaacttaaagttaaaaatatgagctttagaaattaagtttaagttgtttggtaaa 7692426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 36602810 - 36602870
Alignment:
Q  94 tactttaaatttaaagttaaaaataacagcttaaaagataaagttaaagttgtttggtaaa 154  Q
    ||||||||| |||||||||||||||  ||||| | | || ||||| |||||||||||||||    
T  36602810 tactttaaacttaaagttaaaaatatgagctttagaaattaagtttaagttgtttggtaaa 36602870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University