View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_40 (Length: 388)
Name: NF1370_low_40
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_40 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 29 - 388
Target Start/End: Original strand, 5545465 - 5545824
Alignment:
| Q |
29 |
aaaaacatgtcccaacataaatagacacatgattagaattaaatattatacaagtttaattttatatttggcctcaggcgtttattttaagttatacttc |
128 |
Q |
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| T |
5545465 |
aaaaacatgtcccaacataaatagacacatgattagaattaaatattatacaagtttaattttatatttggcctcaggcgtttattttaagttatacttc |
5545564 |
T |
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| Q |
129 |
catcttttacattttaatttgatgtaacattagtcacattaagattagtttgatcttttatgttaagtctcgagtaaatcgtatacaaaatatggcatgt |
228 |
Q |
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| T |
5545565 |
catcttttacattttaatttgatgtaacattagtcacactaggattagtttgatcctttatgttaagtctcgagtaaatcgtgtacaaaatatagcatgt |
5545664 |
T |
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| Q |
229 |
ctaatgaaagtgaacacgtacataaatacttaattttatatttgatcacctacataatatattttaagcttcactctagtcgctaaattataaaagtttt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||| |
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| T |
5545665 |
ctaatgaaagtgaacacgtacataaatacttaatttcatatttgatctcctacataatatattttaagcttcactttagttgctaaattttaaaagtttt |
5545764 |
T |
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| Q |
329 |
aatttgaccccttctcgtgagaaccnnnnnnncttaaaattatagtctctaattgaagct |
388 |
Q |
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|||||| |||||||| ||| |||| ||||||||||||| |||||||||||||| |
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| T |
5545765 |
aatttggccccttcttatgaaaaccaaagaaacttaaaattatagcctctaattgaagct |
5545824 |
T |
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