View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_42 (Length: 376)
Name: NF1370_low_42
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 42903792 - 42903584
Alignment:
| Q |
15 |
aatattgaggaaaaaagtgtaaagtcataataaaatgtaaagcaagtggg-accaaatgtattggataaatttgaaccattagtttctcttacaaaagta |
113 |
Q |
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| T |
42903792 |
aatattgaggaaaaaagtgtaaagtcataataaaatgtaaagcaagtggggaccaaatgtattggataaatttgaaccattagtttctcttacaaaagta |
42903693 |
T |
|
| Q |
114 |
ggaatggataaatatagtttgtttgttgagtgacatagaaatggaatcacttgtatcaaagacaagaagaatggtaagaggcagagaggaagtgtatgtg |
213 |
Q |
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| T |
42903692 |
ggaatggataaatatagtttgtttgttgagtgacataaaaatggaatcacttgtatcaaagacaagaagaatggtaagaggcagagaggaagtgtatgtg |
42903593 |
T |
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| Q |
214 |
gcagcaatg |
222 |
Q |
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||||||||| |
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| T |
42903592 |
gcagcaatg |
42903584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 42908775 - 42908562
Alignment:
| Q |
15 |
aatattgaggaaaaaagtgtaaagtcataataaaatgtaaagcaagtggg-accaaatgtattggataaatttgaaccattagtttctcttacaaaagta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42908775 |
aatattgaggaaaaaagtgtaaagtcataataaaatgtaaagcaagtggggaccaaatgtattggataaatttgaaccattagtttctcttacaaaagta |
42908676 |
T |
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| Q |
114 |
ggaatggataaatatagtttgtttgttgagtgacatagaaatggaatcacttgtatcaaagacaagaagaatggt-----aagaggcagagaggaagtgt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42908675 |
ggaatggataaatatagtttgtttgttgagtgacatagaaatggaatcacttgtatcaaagacaagaagaatggtaagataagaggcagagaggaagtgt |
42908576 |
T |
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| Q |
209 |
atgtggcagcaatg |
222 |
Q |
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|||||||||||||| |
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| T |
42908575 |
atgtggcagcaatg |
42908562 |
T |
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