View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_44 (Length: 370)
Name: NF1370_low_44
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 30 - 224
Target Start/End: Complemental strand, 32597519 - 32597333
Alignment:
| Q |
30 |
ctaatatcttcttcttttaattagcaatgtaaaatcaacgcaaatcaggggttttatttgttggcattttttatacataatgacattgtctcacaaattt |
129 |
Q |
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| T |
32597519 |
ctaatatcttcttcttttaattagcaatgtaaaatcg----------ggggttttatttgttggcattttttatacataatgacattgtctcacaaattt |
32597430 |
T |
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| Q |
130 |
aaggaccaaaatgtttgtttactccaatactaataatatatgtactcagcggatcgttcaaaacatagtggggggaac--atcttgattttgctaga |
224 |
Q |
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| T |
32597429 |
aaggaccaaaatggttgtttactccaatactaataatatatgtactcagcggatcgttcaaaacatagtggggggaacatatcttgattttggtaga |
32597333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 225 - 359
Target Start/End: Complemental strand, 32597297 - 32597156
Alignment:
| Q |
225 |
gctggcagcaaaaatgatagtattcctgcttgttttatacttgcagaattgcaacaaagcctcacaaaaaccaaattaaccgcagaaaagacggaccca- |
323 |
Q |
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| T |
32597297 |
gctggcagcaaaaatgatagtattcctgcttgttttatacttgcagaattgcaacaaagcctcacaaaaaccaaattaaccgcagaaaagacggacccaa |
32597198 |
T |
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| Q |
324 |
------acatagcaatgatttcactatagaatggatagaata |
359 |
Q |
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| T |
32597197 |
acaaccacatagcaatgatttcactatagaatggatagaata |
32597156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 41 - 164
Target Start/End: Complemental strand, 32577449 - 32577320
Alignment:
| Q |
41 |
ttcttttaattagcaatgtaaaatcaacgcaaatcaggggttttatttgttggcattttttatacat--aatgac----attgtctcacaaatttaagga |
134 |
Q |
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||||||||||||||||||||||||||| || |||||| |||||||||||||| ||||||||||||| ||| || || |||||| ||||||||| |
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| T |
32577449 |
ttcttttaattagcaatgtaaaatcaatgctgatcaggtgttttatttgttggaattttttatacattcaataactagaatgacctcacacatttaagga |
32577350 |
T |
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| Q |
135 |
ccaaaatgtttgtttactccaatactaata |
164 |
Q |
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| T |
32577349 |
ccaaaatggttgtttaatccaatactaata |
32577320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 32613893 - 32613843
Alignment:
| Q |
57 |
tgtaaaatcaacgcaaatcaggggttttatttgttggcattttttatacat |
107 |
Q |
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| T |
32613893 |
tgtaaaatcaatgcagatcagaggttttattttttggaattttttatacat |
32613843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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