View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_45 (Length: 368)
Name: NF1370_low_45
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 29 - 358
Target Start/End: Original strand, 27303437 - 27303761
Alignment:
| Q |
29 |
atatgataataacattttgtatgtggtggtgatagtgatgcgcacgaggttgtttagagtgtcatatgcatcaaatatggatttttgttatttccttcca |
128 |
Q |
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| T |
27303437 |
atatgataataacattttgtatgtggtggtgatagtgatgcgcacgaggttgtttagagtgtcatatgcatcaaatatggatttttgttatttccttcca |
27303536 |
T |
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| Q |
129 |
atccatgtgttttgcttcccaatagtacatgaggtgctggttgaatcaaatgtcaactgcagccacgtattttacataaatgccactactt--tgatagt |
226 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27303537 |
atccatgt-ttttgcttcc-aatagtacatgaggtgctggttgaatcaaatgtcaactgcagccacgtattttacataaatgccactacttgttgatagt |
27303634 |
T |
|
| Q |
227 |
cactcttcattcaattcaattcaattctattaacagtgtttacctgtgacttccttcaccttttccataggtccctttcccacatatatctatctttgct |
326 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27303635 |
cactcttcattc-----aattcaattctattaacagtgtttacctgtgacttccttcaccttttccataggtccctttcccacatatatctatctctgct |
27303729 |
T |
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| Q |
327 |
tacaagttccaacaatcatcaccttcttcatc |
358 |
Q |
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| |||||||||||||||||||||||||||||| |
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| T |
27303730 |
tccaagttccaacaatcatcaccttcttcatc |
27303761 |
T |
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