View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_46 (Length: 365)
Name: NF1370_low_46
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 29 - 356
Target Start/End: Original strand, 3012331 - 3012651
Alignment:
| Q |
29 |
agtgtgtgtatgaaatgccaagactacaagcccttttatagccgcaagagaccctaacttcgttccattcatcaaccatatgagttaagtgaacctaatt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3012331 |
agtgtgtgtatgaaatgccaagactacaagcccttttatagccgaaagagaccctaacttcgttccattcatcaaccatatgagttaagtgaacctaatt |
3012430 |
T |
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| Q |
129 |
acacaagattattaaaattcacaaagagaaaaaccacaaaactaagtactggatagggctgctagcctgctacgccccctaccatgaaatttacttgatt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||||||||||| |
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| T |
3012431 |
acacaagattattaaaattcacaaagagaaaaaccacaaaactaagtactggatagggctgcta-cgt------ccccctgccatgaaatttacttgatt |
3012523 |
T |
|
| Q |
229 |
ttccacatttttgaagagtttatggtgatggtttcagcactaagtcttgcaaatttggacaaattatcattgatttttcacttgtcatacatgaaagaag |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3012524 |
ttccacatttttgaagagtttatggtgatggtttcagcactaagtcttgcgaatttggacaaattgacattgatttttcacttgtcatacatgaaagaag |
3012623 |
T |
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| Q |
329 |
cattccattaagtccatttaatattctt |
356 |
Q |
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|||||||||||||||||||||| ||||| |
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| T |
3012624 |
cattccattaagtccatttaattttctt |
3012651 |
T |
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