View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_50 (Length: 352)
Name: NF1370_low_50
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 40514846 - 40514500
Alignment:
| Q |
1 |
agtacatgacacaaactccaaccaaaccacaattactgtaatggaaccagctgatcaacaacaacatcaaccacgtttggaacaaagtactac---aaat |
97 |
Q |
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| T |
40514846 |
agtacatgacacaaactccaaccaaaccacaattactgtaatggaaccagctgatcaacaaca---tcaaccacgtttggaacaaagtactactacaaat |
40514750 |
T |
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| Q |
98 |
gtgtgcagaagcaatgatcaaattaggactataccatatttatctgaagtgaaattatgtaacagcaataatattaattcaattagtagttgttgctgct |
197 |
Q |
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| T |
40514749 |
gtgtgtagaagcaatgatcaaattaggactataccatatttatctgaagtgaaattatgtaacagcaataatattaattcaattagtagttgttgctgct |
40514650 |
T |
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| Q |
198 |
caatatgtttgatggattataaagaatctgatttgttgagaatgcttcctggttgtggtcatttgtttcatgttgcttgtgttgatccttggttgataat |
297 |
Q |
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| T |
40514649 |
caatatgtttgatggattataaagaatctgatttgttgagaatgcttcctagttgtggtcatttgtttcatgttgcttgtgttgatccttggttgataat |
40514550 |
T |
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| Q |
298 |
gaagttgacatgtccagtttgtagaaagacatacagatcagtataatcta |
347 |
Q |
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| T |
40514549 |
gaagttgacatgtccagtttgtagaaagacatacagatcagtataatcta |
40514500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 40509350 - 40509283
Alignment:
| Q |
142 |
tgaagtgaaattatgtaacagcaataatattaattcaattagtagttgttgctgctcaatatgtttgatgg |
212 |
Q |
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| T |
40509350 |
tgaagtcaaattgtgtaacagcaatagtattaattca---agtagttgttgctgcttcatatgcttgatgg |
40509283 |
T |
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