View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370_low_55 (Length: 337)
Name: NF1370_low_55
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370_low_55 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 144 - 337
Target Start/End: Complemental strand, 42377130 - 42376937
Alignment:
| Q |
144 |
tcagcatctacaaagcaaacaacaagaaacatcctctgaaaattgttcctcaaacatggattctgttaaggttgttgatgatgtctccatcacaagtaac |
243 |
Q |
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| T |
42377130 |
tcagcatctacaaagcaaacaacaagaaacatcctctgaaaattgttcctcaaacatggattctgttaaggttgttgatgatgtctccatcacaagtaac |
42377031 |
T |
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| Q |
244 |
agtttatgctcaacgccaaaaggtaaaaaatttcggataccagaaatttccacatgtccaccagcaccaaagaaacaaagggtgctttcaaatt |
337 |
Q |
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| T |
42377030 |
agtttatgctcaacgccaaaaggtaaaaaatttcggataccagaaatttccacatgtccaccagcaccaaagaaacaaagggtgctttcaaatt |
42376937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 240 - 337
Target Start/End: Complemental strand, 24578926 - 24578829
Alignment:
| Q |
240 |
taacagtttatgctcaacgccaaaaggtaaaaaatttcggataccagaaatttccacatgtccaccagcaccaaagaaacaaagggtgctttcaaatt |
337 |
Q |
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| T |
24578926 |
taacagtgcatgttcaacaccaaaaggtcagaaatataggataccagagatttcaacatgtcctccagcaccaaagaaacaaagggtagtttcaaatt |
24578829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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